Variant report

Variant	rs535398308
Chromosome Location	chr19:36762844-36762845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520020	chr19:36721368-36822594	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv9715	chr19:36729688-36811749	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1063208	chr19:36743461-36847486	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv961212	chr19:36744378-36801298	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv960831	chr19:36744378-36813769	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1056901	chr19:36749658-36847486	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv511620	chr19:36749804-36801902	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv579426	chr19:36749804-36802219	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv820362	chr19:36749963-36807301	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1061054	chr19:36751703-36847486	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1055260	chr19:36752221-36847486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1056850	chr19:36752663-36847486	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1064983	chr19:36752663-36847625	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1057579	chr19:36752663-36847822	Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv16483	chr19:36757413-36802722	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3385690	chr19:36758212-36801810	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3434148	chr19:36758212-36801810	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3451584	chr19:36758212-36801810	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3332109	chr19:36758212-36801910	ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3396192	chr19:36758212-36801910	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3403032	chr19:36758212-36801910	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv1827998	chr19:36758370-36799381	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
23	esv1828325	chr19:36759505-36794374	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
24	esv1830758	chr19:36760960-36799381	ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
25	esv1817149	chr19:36760960-36801941	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv1811946	chr19:36761187-36799381	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36749200-36764800	Weak transcription	Brain Substantia Nigra	brain
2	chr19:36749400-36764200	Weak transcription	Brain Angular Gyrus	brain
3	chr19:36749600-36763400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr19:36760800-36764400	Weak transcription	HUVEC	blood vessel
5	chr19:36762000-36763200	ZNF genes & repeats	Fetal Brain Female	brain
6	chr19:36762600-36763000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr19:36762600-36763000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:36762600-36763000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr19:36762600-36763000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:36762600-36763000	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr19:36762600-36763000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
12	chr19:36762600-36763000	ZNF genes & repeats	Psoas Muscle	Psoas
13	chr19:36762600-36763200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:36762600-36763200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr19:36762600-36763200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr19:36762600-36763200	ZNF genes & repeats	Aorta	Aorta
17	chr19:36762600-36763200	ZNF genes & repeats	Liver	Liver
18	chr19:36762600-36763200	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr19:36762600-36763200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr19:36762600-36763200	ZNF genes & repeats	Esophagus	oesophagus
21	chr19:36762600-36763200	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr19:36762600-36763200	ZNF genes & repeats	Placenta	Placenta
23	chr19:36762600-36763200	ZNF genes & repeats	Gastric	stomach
24	chr19:36762600-36763200	ZNF genes & repeats	Lung	lung
25	chr19:36762600-36763200	ZNF genes & repeats	Ovary	ovary
26	chr19:36762600-36763200	ZNF genes & repeats	Pancreas	Pancrea
27	chr19:36762600-36763200	Genic enhancers	Right Ventricle	heart
28	chr19:36762600-36763200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
29	chr19:36762600-36763200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
30	chr19:36762600-36763200	Flanking Bivalent TSS/Enh	Spleen	Spleen
31	chr19:36762800-36763000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:36762800-36763000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr19:36762800-36763000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr19:36762800-36763000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chr19:36762800-36763000	ZNF genes & repeats	Colon Smooth Muscle	Colon
36	chr19:36762800-36763200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
37	chr19:36762800-36763200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr19:36762800-36763200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
39	chr19:36762800-36763200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
40	chr19:36762800-36763200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
41	chr19:36762800-36763200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr19:36762800-36763200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr19:36762800-36763200	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr19:36762800-36763200	ZNF genes & repeats	Brain Anterior Caudate	brain
45	chr19:36762800-36763200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
46	chr19:36762800-36763200	ZNF genes & repeats	Fetal Lung	lung
47	chr19:36762800-36763200	ZNF genes & repeats	Left Ventricle	heart
48	chr19:36762800-36763200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
49	chr19:36762800-36763200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
50	chr19:36762800-36763200	ZNF genes & repeats	Right Atrium	heart

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