Variant report

Variant	rs535413317
Chromosome Location	chr6:72000257-72000258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:72000211-72000582	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr6:71999833-72000643	Hela-S3	cervix:	n/a	chr6:72000467-72000478

Variant related genes	Relation type
OGFRL1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795873	chr6:71997278-72005794	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1841286	chr6:71997278-72006512	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1802752	chr6:71998480-72005794	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71997000-72002000	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr6:71997200-72000400	Active TSS	A549	lung
3	chr6:71997400-72000400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:71997600-72001400	Active TSS	Brain Substantia Nigra	brain
5	chr6:71997800-72000800	Active TSS	HSMMtube	muscle
6	chr6:71997800-72002000	Active TSS	Brain Cingulate Gyrus	brain
7	chr6:71997800-72003000	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr6:71998000-72000400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr6:71998000-72000600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:71998000-72002200	Active TSS	Brain Angular Gyrus	brain
11	chr6:71998200-72000400	Active TSS	HMEC	breast
12	chr6:71998200-72000600	Active TSS	Fetal Thymus	thymus
13	chr6:71998200-72002200	Active TSS	GM12878-XiMat	blood
14	chr6:71998400-72000400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:71999000-72000800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr6:71999000-72002000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:71999200-72003600	Weak transcription	Spleen	Spleen
18	chr6:71999200-72003800	Weak transcription	Gastric	stomach
19	chr6:71999200-72003800	Weak transcription	Ovary	ovary
20	chr6:71999400-72000400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:71999400-72000600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:71999400-72000800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr6:71999400-72001000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr6:71999400-72001800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:71999400-72002000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr6:71999600-72000400	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr6:71999600-72000400	Transcr. at gene 5' and 3'	HSMM	muscle
28	chr6:71999600-72000600	Weak transcription	Aorta	Aorta
29	chr6:71999600-72000800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:71999600-72002000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:71999600-72002000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr6:71999600-72002000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr6:71999600-72002600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr6:71999600-72003800	Weak transcription	Stomach Mucosa	stomach
35	chr6:71999600-72012600	Weak transcription	Colonic Mucosa	Colon
36	chr6:71999800-72000400	Enhancers	Fetal Intestine Large	intestine
37	chr6:71999800-72000600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:71999800-72000600	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr6:71999800-72000600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr6:71999800-72000800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:71999800-72000800	Weak transcription	Small Intestine	intestine
42	chr6:71999800-72001000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr6:71999800-72001000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:71999800-72001000	Enhancers	Colon Smooth Muscle	Colon
45	chr6:71999800-72001000	Active TSS	Fetal Lung	lung
46	chr6:71999800-72001400	Enhancers	Fetal Intestine Small	intestine
47	chr6:71999800-72001800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:71999800-72002000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:71999800-72002000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr6:71999800-72002000	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links