Variant report

Variant	rs535415876
Chromosome Location	chr1:10709904-10709905
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr1:10709355-10709908	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr1:10709066-10710229	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr1:10709701-10710232	H1-hESC	embryonic stem cell:	n/a	n/a
4	EGR1	chr1:10709780-10710248	H1-hESC	embryonic stem cell:	n/a	n/a
5	ZNF143	chr1:10709855-10710198	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr1:10709026-10710241	H1-hESC	embryonic stem cell:	n/a	chr1:10709692-10709701 chr1:10709321-10709332
7	MAX	chr1:10709545-10710259	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr1:10709839-10710039	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr1:10708998-10710204	H1-hESC	embryonic stem cell:	n/a	chr1:10709708-10709721
10	TEAD4	chr1:10709426-10710090	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:10709885-10709935	HRCEpiC	kidney:	n/a
2	chr1:10709885-10709935	A549	lung:	n/a
3	chr1:10709885-10709935	HAEpiC	amniotic membrane:	n/a
4	chr1:10709885-10709935	AG04450	lung:	fetal
5	chr1:10709885-10709935	BE2_C	brain:	n/a
6	chr1:10709885-10709935	ProgFib	skin:	n/a
7	chr1:10709885-10709935	AoSMC	blood vessel:	n/a
8	chr1:10709885-10709935	LNCaP	prostate:	n/a
9	chr1:10709885-10709935	NB4	blood:	n/a
10	chr1:10709885-10709935	SK-N-SH	brain:	n/a
11	chr1:10709885-10709935	IMR90	lung:	fetal
12	chr1:10709885-10709935	HEK293	kidney:	embryo
13	chr1:10709885-10709935	CMK	blood:	n/a
14	chr1:10709885-10709935	NHBE	bronchial:	n/a
15	chr1:10709885-10709935	HMEC	breast:	n/a
16	chr1:10709885-10709935	ovcar-3	ovarian:	n/a
17	chr1:10709885-10709935	NH-A	brain:	n/a
18	chr1:10709885-10709935	GM12891	blood:	n/a
19	chr1:10709885-10709935	HRE	kidney:	n/a
20	chr1:10709885-10709935	HUVEC	blood vessel:	n/a
21	chr1:10709885-10709935	SAEC	small airway:	n/a
22	chr1:10709885-10709935	NHDF-neo	bronchial:	n/a
23	chr1:10709885-10709935	HCM	heart:	n/a
24	chr1:10709885-10709935	NT2-D1	testis:	n/a
25	chr1:10709885-10709935	Hela-S3	cervix:	n/a
26	chr1:10709885-10709935	U87	brain:	n/a
27	chr1:10709885-10709935	HNPCEpiC	eye:	n/a
28	chr1:10709885-10709935	SK-N-SH_RA	brain:	n/a
29	chr1:10709885-10709935	HCT-116	colon:	n/a
30	chr1:10709885-10709935	GM12892	blood:	n/a
31	chr1:10709885-10709935	GM19239	blood:	n/a
32	chr1:10709885-10709935	HL-60	blood:	n/a
33	chr1:10709885-10709935	SK-N-MC	brain:	n/a
34	chr1:10709885-10709935	HCPEpiC	choroid plexus:	n/a
35	chr1:10709885-10709935	PANC-1	pancreas:	n/a
36	chr1:10709885-10709935	RPTEC	kidney:	n/a
37	chr1:10709885-10709935	K562	blood:	n/a
38	chr1:10709885-10709935	BJ	skin:	n/a
39	chr1:10709885-10709935	H1-hESC	embryonic stem cell:	embryo
40	chr1:10709885-10709935	AG10803	skin:	n/a
41	chr1:10709885-10709935	HPAEpiC	pulmonary alveolar:	n/a
42	chr1:10709885-10709935	Caco-2	colon:	n/a
43	chr1:10709885-10709935	AG04449	skin:	fetal
44	chr1:10709885-10709935	MCF10A-Er-Src	breast:	n/a
45	chr1:10709885-10709935	GM12878	blood:	n/a
46	chr1:10709885-10709935	HRPEpiC	eye:	n/a
47	chr1:10709885-10709935	HIPEpiC	eye:	n/a
48	chr1:10709885-10709935	ECC-1	luminal epithelium:	n/a
49	chr1:10709885-10709935	AG09309	skin:	n/a
50	chr1:10709885-10709935	Hepatocyte	liver:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:10703574..10707168-chr1:10709558..10711927,3	MCF-7	breast:
2	chr1:10708501..10711105-chr1:10716325..10718436,2	K562	blood:
3	chr1:10708228..10710600-chr1:10848696..10851530,2	K562	blood:

No data

Variant related genes	Relation type
CASZ1	TF binding region
CASZ1	CpG island
ENSG00000130940	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1010424	chr1:10667559-10747891	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv464394	chr1:10673094-10767902	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv545396	chr1:10673094-10767902	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1828181	chr1:10673130-10829937	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv464505	chr1:10673194-10767785	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv545397	chr1:10673194-10767785	Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv464616	chr1:10673194-10767902	Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv545398	chr1:10673194-10767902	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv464727	chr1:10673194-10777260	Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv545399	chr1:10673194-10777260	Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1003427	chr1:10675978-10727284	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1010420	chr1:10675978-10747891	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1004063	chr1:10675978-10780682	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv1014003	chr1:10675978-10788624	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv1014818	chr1:10675978-10846823	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv828030	chr1:10677562-10795161	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv871824	chr1:10684098-10743363	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv871950	chr1:10684098-10750432	Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv870683	chr1:10684098-10757199	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv871361	chr1:10684098-10767785	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv871290	chr1:10684098-10777260	Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv871191	chr1:10684098-10796866	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
25	nsv464838	chr1:10684098-10842021	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
26	nsv545400	chr1:10684098-10842021	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
27	nsv534857	chr1:10688713-10714182	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv1001806	chr1:10688713-10727284	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv998197	chr1:10688713-10742654	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	nsv534858	chr1:10688713-10742654	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv997631	chr1:10688713-10747891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
32	nsv1015054	chr1:10688713-10780682	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
33	nsv1006689	chr1:10688713-10822684	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
34	nsv871478	chr1:10689942-10766466	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
35	nsv871156	chr1:10690948-10750432	Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	nsv464949	chr1:10690948-10757199	Bivalent Enhancer Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
37	nsv545401	chr1:10690948-10757199	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
38	nsv465061	chr1:10690948-10796866	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
39	nsv545402	chr1:10690948-10796866	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
40	nsv871070	chr1:10690948-10796866	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
41	nsv871737	chr1:10693294-10757199	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
42	nsv870483	chr1:10694125-10750432	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
43	nsv870460	chr1:10694125-10757199	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
44	nsv870923	chr1:10694125-10801585	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
45	nsv525693	chr1:10694125-10840905	Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
46	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
48	nsv828364	chr1:10697810-10764164	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
49	nsv1012022	chr1:10698017-10727284	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
50	nsv534859	chr1:10698017-10727284	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10651600-10715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:10697400-10722000	Strong transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:10698200-10713600	Weak transcription	Small Intestine	intestine
4	chr1:10698800-10726400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:10698800-10752000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:10699000-10712400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:10699000-10713600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:10699000-10714000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:10699000-10723000	Weak transcription	Psoas Muscle	Psoas
10	chr1:10700400-10722800	Weak transcription	Ovary	ovary
11	chr1:10702600-10721600	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr1:10703400-10711800	Weak transcription	Fetal Heart	heart
13	chr1:10704400-10720400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:10705200-10710600	Weak transcription	Placenta	Placenta
15	chr1:10705200-10714000	Weak transcription	HSMMtube	muscle
16	chr1:10705400-10712600	Weak transcription	Liver	Liver
17	chr1:10705400-10725800	Weak transcription	HMEC	breast
18	chr1:10706200-10715400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:10706400-10711600	Weak transcription	Thymus	Thymus
20	chr1:10706400-10712600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:10706400-10713000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr1:10706400-10713000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:10706400-10724000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr1:10706600-10719200	Weak transcription	Primary B cells from cord blood	blood
25	chr1:10706600-10723200	Weak transcription	Right Atrium	heart
26	chr1:10707000-10712800	Strong transcription	Right Ventricle	heart
27	chr1:10707400-10712400	Bivalent Enhancer	Fetal Stomach	stomach
28	chr1:10707800-10710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:10707800-10712000	Strong transcription	Gastric	stomach
30	chr1:10707800-10712800	Weak transcription	Dnd41	blood
31	chr1:10707800-10731200	Weak transcription	NHEK	skin
32	chr1:10708000-10712400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:10708000-10719200	Weak transcription	Stomach Mucosa	stomach
34	chr1:10708200-10713000	Weak transcription	Aorta	Aorta
35	chr1:10708200-10713200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:10708400-10718400	Weak transcription	Primary T cells from cord blood	blood
37	chr1:10708600-10710000	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr1:10708600-10710200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr1:10708600-10712600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:10708800-10710000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:10708800-10711000	Enhancers	Brain Germinal Matrix	brain
42	chr1:10708800-10711400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:10708800-10712400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:10709200-10710000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr1:10709200-10710200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
46	chr1:10709200-10710200	Bivalent Enhancer	Fetal Brain Male	brain
47	chr1:10709200-10710400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr1:10709400-10710000	Bivalent Enhancer	Fetal Lung	lung
49	chr1:10709400-10710400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr1:10709400-10711000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links