Variant report

Variant	rs535430587
Chromosome Location	chr16:30711590-30711591
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:37)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr16:30708484-30711599	IMR90	lung:	n/a	chr16:30709729-30709739 chr16:30710135-30710145 chr16:30710431-30710441 chr16:30709439-30709449
2	CHD1	chr16:30708781-30711645	IMR90	lung:	n/a	chr16:30709461-30709470 chr16:30709865-30709875 chr16:30709332-30709339
3	MXI1	chr16:30708677-30712360	SK-N-SH	brain:	n/a	n/a
4	KAP1	chr16:30711461-30711649	U2OS	brain:	n/a	n/a
5	MAX	chr16:30711068-30711669	K562	blood:	n/a	n/a
6	POLR2A	chr16:30709137-30711613	PANC-1	pancreas:	n/a	n/a
7	MXI1	chr16:30711179-30711696	K562	blood:	n/a	n/a
8	HCFC1	chr16:30708556-30711606	Hela-S3	cervix:	n/a	n/a

No data

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30455606..30458021-chr16:30708271..30711860,5	K562	blood:
2	chr16:30667783..30674540-chr16:30707310..30714065,38	K562	blood:
3	chr16:30369886..30371566-chr16:30709184..30711888,2	MCF-7	breast:
4	chr16:30708426..30712348-chr16:30772033..30775384,7	MCF-7	breast:
5	chr16:30537208..30540827-chr16:30710007..30712078,3	MCF-7	breast:
6	chr16:30709832..30711688-chr16:30788806..30790347,2	MCF-7	breast:
7	chr16:30537007..30539690-chr16:30709715..30713303,3	K562	blood:
8	chr16:30381749..30384813-chr16:30709284..30711839,3	MCF-7	breast:
9	chr16:30707963..30711732-chr16:30932569..30936139,6	K562	blood:
10	chr16:30123424..30125904-chr16:30709036..30711969,2	K562	blood:
11	chr16:30708929..30712034-chr16:30758251..30761730,4	K562	blood:
12	chr16:30707422..30715768-chr16:30721242..30729414,24	MCF-7	breast:
13	chr16:30708356..30712729-chr16:30907440..30911095,7	K562	blood:
14	chr16:30708909..30711747-chr16:30932178..30935236,6	MCF-7	breast:
15	chr16:30707234..30713291-chr16:30747398..30755461,17	MCF-7	breast:
16	chr16:30709491..30711617-chr16:30777557..30779616,3	K562	blood:
17	chr16:30660775..30663969-chr16:30709456..30712373,8	K562	blood:
18	chr16:30707181..30712037-chr16:30757231..30762842,12	MCF-7	breast:
19	chr16:30710639..30712268-chr16:30903660..30905594,2	MCF-7	breast:
20	chr16:30709500..30711717-chr16:31190248..31191999,2	MCF-7	breast:
21	chr16:30678341..30683972-chr16:30708353..30711640,7	K562	blood:
22	chr16:30678548..30685862-chr16:30707986..30712280,7	K562	blood:
23	chr16:30709802..30712559-chr16:30757474..30761628,7	MCF-7	breast:
24	chr16:30710536..30712181-chr16:30733046..30734815,2	K562	blood:
25	chr16:30708001..30712248-chr16:30758568..30761366,5	K562	blood:
26	chr16:30707557..30712450-chr16:30785751..30791890,10	K562	blood:
27	chr16:30665738..30673826-chr16:30707321..30713630,33	K562	blood:
28	chr16:30665347..30684079-chr16:30697204..30714344,66	MCF-7	breast:
29	chr16:30709959..30711642-chr16:30773675..30775818,2	K562	blood:
30	chr16:30667507..30674392-chr16:30704170..30712522,40	MCF-7	breast:
31	chr16:30709491..30711617-chr16:30777557..30779152,2	K562	blood:
32	chr16:30708138..30712367-chr16:30742355..30746018,6	K562	blood:
33	chr16:30709744..30712013-chr16:30968880..30970502,2	MCF-7	breast:
34	chr16:30708170..30712232-chr16:30770048..30773747,7	MCF-7	breast:
35	chr16:30707689..30714423-chr16:30749050..30754714,18	MCF-7	breast:
36	chr16:30708936..30712121-chr16:30967511..30970972,5	K562	blood:
37	chr16:30708760..30712474-chr16:30717976..30728042,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261840	TF binding region
SRCAP	TF binding region
ENSG00000169957	Chromatin interaction
ENSG00000179918	Chromatin interaction
ENSG00000150281	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000099381	Chromatin interaction
ENSG00000156858	Chromatin interaction
ENSG00000262026	Chromatin interaction
ENSG00000156873	Chromatin interaction
ENSG00000206755	Chromatin interaction
ENSG00000102886	Chromatin interaction
ENSG00000196118	Chromatin interaction
ENSG00000260899	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000211591	Chromatin interaction
ENSG00000169221	Chromatin interaction
ENSG00000103549	Chromatin interaction
ENSG00000099385	Chromatin interaction
ENSG00000180209	Chromatin interaction
ENSG00000080603	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000099364	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
7	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
8	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
9	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
10	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
11	esv3372612	chr16:30709076-30711624	Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
12	esv33681	chr16:30711208-30714408	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers	TF binding region Chromatin interactive region	33 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30708800-30711600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:30709200-30711800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr16:30709400-30711600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr16:30710600-30711600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:30710600-30711600	Flanking Active TSS	Liver	Liver
6	chr16:30710600-30711600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
7	chr16:30710600-30711600	Transcr. at gene 5' and 3'	Dnd41	blood
8	chr16:30710600-30711800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
9	chr16:30710800-30711600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:30710800-30711600	Flanking Active TSS	Rectal Smooth Muscle	rectum
11	chr16:30710800-30711800	Flanking Active TSS	Fetal Heart	heart
12	chr16:30711000-30711600	Genic enhancers	Primary B cells from cord blood	blood
13	chr16:30711000-30711600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr16:30711000-30711600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr16:30711000-30711600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:30711000-30711600	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
17	chr16:30711000-30711600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
18	chr16:30711000-30711800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr16:30711000-30712000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr16:30711000-30712000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr16:30711000-30712000	Enhancers	Primary hematopoietic stem cells	blood
22	chr16:30711000-30712000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
23	chr16:30711000-30712000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr16:30711000-30712000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
25	chr16:30711000-30712200	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr16:30711000-30712200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr16:30711000-30712200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
28	chr16:30711000-30712200	Genic enhancers	Spleen	Spleen
29	chr16:30711000-30712200	Transcr. at gene 5' and 3'	Hela-S3	cervix
30	chr16:30711000-30712200	Transcr. at gene 5' and 3'	HepG2	liver
31	chr16:30711000-30712400	Transcr. at gene 5' and 3'	A549	lung
32	chr16:30711200-30711600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
33	chr16:30711200-30711600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
34	chr16:30711200-30711600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr16:30711200-30711600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
36	chr16:30711200-30711600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
37	chr16:30711200-30711600	Transcr. at gene 5' and 3'	Brain Angular Gyrus	brain
38	chr16:30711200-30711600	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
39	chr16:30711200-30711600	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
40	chr16:30711200-30711600	Flanking Active TSS	Fetal Brain Female	brain
41	chr16:30711200-30711600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
42	chr16:30711200-30711600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
43	chr16:30711200-30711600	Flanking Active TSS	HMEC	breast
44	chr16:30711200-30711600	Flanking Active TSS	HSMMtube	muscle
45	chr16:30711200-30711600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
46	chr16:30711200-30711800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:30711200-30711800	Genic enhancers	Brain Cingulate Gyrus	brain
48	chr16:30711200-30711800	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
49	chr16:30711200-30711800	Transcr. at gene 5' and 3'	NH-A	brain
50	chr16:30711200-30711800	Transcr. at gene 5' and 3'	NHEK	skin

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