The 2.0 version of rSNPBase

Variant report

Variant rs535438225
Chromosome Location chr1:168437639-168437640
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:168433800-168443400 Weak transcription Liver Liver
2 chr1:168434400-168443600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr1:168434800-168439200 Enhancers Dnd41 blood
4 chr1:168434800-168440800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr1:168435000-168437800 Enhancers Fetal Kidney kidney
6 chr1:168435000-168438400 Enhancers Primary hematopoietic stem cells blood
7 chr1:168435000-168438400 Enhancers Placenta Amnion Placenta Amnion
8 chr1:168435000-168439600 Enhancers HSMMtube muscle
9 chr1:168435000-168440400 Enhancers Primary T helper cells fromperipheralblood blood
10 chr1:168435000-168440600 Enhancers Primary T helper naive cells from peripheral blood blood
11 chr1:168435000-168440600 Enhancers Rectal Smooth Muscle rectum
12 chr1:168435200-168437800 Enhancers Primary monocytes fromperipheralblood blood
13 chr1:168435200-168437800 Enhancers Colonic Mucosa Colon
14 chr1:168435200-168437800 Enhancers Rectal Mucosa Donor 29 rectum
15 chr1:168435200-168438200 Flanking Active TSS GM12878-XiMat blood
16 chr1:168435200-168439400 Enhancers Primary T cells fromperipheralblood blood
17 chr1:168435200-168439800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr1:168435200-168439800 Enhancers NHDF-Ad bronchial
19 chr1:168435200-168440000 Enhancers Primary T cells from cord blood blood
20 chr1:168435200-168440200 Enhancers Muscle Satellite Cultured Cells --
21 chr1:168435200-168440400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:168435200-168440400 Enhancers Breast Myoepithelial Primary Cells Breast
23 chr1:168435200-168440400 Enhancers HSMM muscle
24 chr1:168435200-168440600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:168435200-168440600 Enhancers Colon Smooth Muscle Colon
26 chr1:168435200-168440600 Enhancers Skeletal Muscle Female skeletal muscle
27 chr1:168435200-168440600 Enhancers HMEC breast
28 chr1:168435200-168440600 Enhancers NHEK skin
29 chr1:168435200-168440800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:168435400-168439200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:168435400-168439800 Enhancers Adipose Nuclei Adipose
32 chr1:168435400-168439800 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr1:168435400-168440600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:168435600-168437800 Enhancers Duodenum Smooth Muscle Duodenum
35 chr1:168435600-168439000 Weak transcription Ovary ovary
36 chr1:168435800-168438000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:168435800-168438200 Enhancers ES-I3 Cell Line embryonic stem cell
38 chr1:168435800-168438200 Weak transcription Left Ventricle heart
39 chr1:168435800-168438200 Weak transcription Pancreas Pancrea
40 chr1:168435800-168438400 Enhancers Primary T regulatory cells fromperipheralblood blood
41 chr1:168435800-168438600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr1:168435800-168451400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr1:168436000-168439800 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr1:168436200-168438200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:168436200-168438200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:168436200-168438800 Weak transcription Fetal Lung lung
47 chr1:168436200-168440000 Weak transcription ES-WA7 Cell Line embryonic stem cell
48 chr1:168436200-168440200 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr1:168436400-168437800 Enhancers iPS-20b Cell Line embryonic stem cell
50 chr1:168436400-168439000 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015