Variant report

Variant	rs535438682
Chromosome Location	chr2:153252880-153252881
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1005012	chr2:153206764-153273886	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875291	chr2:153251742-153339823	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153233800-153255400	Weak transcription	NHEK	skin
2	chr2:153237400-153255400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:153237400-153255400	Weak transcription	HMEC	breast
4	chr2:153238600-153258600	Weak transcription	Left Ventricle	heart
5	chr2:153241200-153255400	Weak transcription	Pancreas	Pancrea
6	chr2:153246600-153266600	Enhancers	Brain Substantia Nigra	brain
7	chr2:153247000-153257800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:153247200-153255400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:153247400-153255400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:153247400-153277600	Weak transcription	Fetal Intestine Small	intestine
11	chr2:153247800-153258800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:153248800-153253600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:153249200-153253800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:153249200-153254200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:153249400-153253200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:153249600-153255400	Weak transcription	Gastric	stomach
17	chr2:153249600-153255400	Weak transcription	Lung	lung
18	chr2:153249600-153259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:153250000-153253200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:153250000-153254200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr2:153250400-153257600	Weak transcription	HepG2	liver
22	chr2:153250800-153253600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:153250800-153258800	Weak transcription	Small Intestine	intestine
24	chr2:153251200-153253800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:153251200-153254000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr2:153251400-153253600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr2:153251400-153253800	Enhancers	Fetal Brain Male	brain
28	chr2:153251600-153253200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr2:153251600-153253200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr2:153251600-153253200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:153251600-153253800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:153251800-153253600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr2:153251800-153253800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:153252000-153253200	Active TSS	Aorta	Aorta
35	chr2:153252000-153255400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:153252000-153269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr2:153252200-153253000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:153252200-153253200	Active TSS	NHLF	lung
39	chr2:153252400-153253000	Active TSS	Stomach Smooth Muscle	stomach
40	chr2:153252400-153253000	Flanking Active TSS	NH-A	brain
41	chr2:153252400-153253200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr2:153252400-153253200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr2:153252400-153253200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr2:153252400-153253600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr2:153252400-153258000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr2:153252600-153253000	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr2:153252600-153253000	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr2:153252600-153253000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr2:153252600-153253000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:153252600-153253000	Active TSS	Duodenum Smooth Muscle	Duodenum

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