Variant report

Variant	rs535532419
Chromosome Location	chr11:120072398-120072399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3510698	chr11:120072292-120075890	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120062200-120073600	Enhancers	Fetal Intestine Small	intestine
2	chr11:120065800-120074600	Enhancers	Fetal Intestine Large	intestine
3	chr11:120066600-120073200	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:120068800-120078400	Weak transcription	Small Intestine	intestine
5	chr11:120069800-120074400	Weak transcription	Fetal Lung	lung
6	chr11:120069800-120076000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:120069800-120078400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:120070000-120075200	Weak transcription	Pancreas	Pancrea
9	chr11:120070200-120077200	Weak transcription	Spleen	Spleen
10	chr11:120070400-120073800	Enhancers	HepG2	liver
11	chr11:120070800-120075800	Weak transcription	Liver	Liver
12	chr11:120071000-120074400	Weak transcription	Placenta	Placenta
13	chr11:120071400-120072400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr11:120071400-120078400	Weak transcription	Brain Anterior Caudate	brain
15	chr11:120072000-120073000	Enhancers	Fetal Kidney	kidney
16	chr11:120072200-120072400	Enhancers	Fetal Stomach	stomach
17	chr11:120072200-120072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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