Variant report

Variant	rs535540882
Chromosome Location	chr3:195935138-195935139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr3:195934665-195935151	K562	blood:	n/a	n/a
2	MYC	chr3:195935103-195935460	K562	blood:	n/a	chr3:195935244-195935253
3	EGR1	chr3:195934997-195935413	H1-hESC	embryonic stem cell:	n/a	chr3:195935245-195935254 chr3:195935244-195935254 chr3:195935244-195935254
4	USF2	chr3:195934826-195935436	H1-hESC	embryonic stem cell:	n/a	n/a
5	IRF1	chr3:195934679-195935494	K562	blood:	n/a	n/a
6	SP4	chr3:195934956-195935324	H1-hESC	embryonic stem cell:	n/a	chr3:195935101-195935112 chr3:195935083-195935094
7	EGR1	chr3:195935021-195935583	ECC-1	luminal epithelium:	n/a	chr3:195935245-195935254 chr3:195935244-195935254 chr3:195935244-195935254
8	MAX	chr3:195935074-195935475	K562	blood:	n/a	chr3:195935244-195935253
9	TBP	chr3:195934727-195935413	K562	blood:	n/a	n/a
10	SP4	chr3:195934684-195935462	H1-hESC	embryonic stem cell:	n/a	chr3:195935101-195935112 chr3:195935083-195935094 chr3:195934699-195934715
11	MAX	chr3:195934694-195935705	K562	blood:	n/a	chr3:195935244-195935253
12	MAX	chr3:195935035-195935611	H1-hESC	embryonic stem cell:	n/a	chr3:195935244-195935253
13	SP1	chr3:195934645-195935271	K562	blood:	n/a	chr3:195935101-195935112 chr3:195934689-195934703 chr3:195935083-195935094
14	USF1	chr3:195935087-195935463	H1-hESC	embryonic stem cell:	n/a	n/a
15	USF1	chr3:195934986-195935589	ECC-1	luminal epithelium:	n/a	n/a
16	NR2F2	chr3:195934660-195935614	K562	blood:	n/a	n/a
17	USF1	chr3:195934941-195935414	K562	blood:	n/a	n/a
18	ELF1	chr3:195935055-195935491	K562	blood:	n/a	chr3:195935370-195935383
19	MAX	chr3:195934699-195935638	ECC-1	luminal epithelium:	n/a	chr3:195935244-195935253
20	MXI1	chr3:195934674-195935654	SK-N-SH	brain:	n/a	chr3:195935526-195935535 chr3:195935243-195935252
21	EGR1	chr3:195934920-195935437	K562	blood:	n/a	chr3:195935245-195935254 chr3:195935244-195935254 chr3:195935244-195935254
22	EGR1	chr3:195935024-195935586	ECC-1	luminal epithelium:	n/a	chr3:195935245-195935254 chr3:195935244-195935254 chr3:195935244-195935254
23	EGR1	chr3:195934662-195935436	K562	blood:	n/a	chr3:195934702-195934715 chr3:195934701-195934716 chr3:195935245-195935254 chr3:195935244-195935254 chr3:195935244-195935254
24	MYC	chr3:195934977-195935516	K562	blood:	n/a	chr3:195935244-195935253
25	E2F6	chr3:195935078-195935392	K562	blood:	n/a	n/a
26	E2F6	chr3:195934701-195935639	H1-hESC	embryonic stem cell:	n/a	n/a
27	E2F6	chr3:195934708-195935483	H1-hESC	embryonic stem cell:	n/a	n/a
28	MAX	chr3:195935086-195935495	H1-hESC	embryonic stem cell:	n/a	chr3:195935244-195935253
29	USF1	chr3:195935132-195935325	SK-N-SH_RA	brain:	n/a	n/a
30	TAF1	chr3:195934770-195935176	H1-hESC	embryonic stem cell:	n/a	n/a
31	MXI1	chr3:195935107-195935423	H1-hESC	embryonic stem cell:	n/a	chr3:195935243-195935252
32	ZBTB7A	chr3:195935059-195935316	K562	blood:	n/a	n/a
33	POLR2A	chr3:195934681-195935546	K562	blood:	n/a	n/a
34	SP1	chr3:195934634-195935499	H1-hESC	embryonic stem cell:	n/a	chr3:195935101-195935112 chr3:195934689-195934703 chr3:195935083-195935094
35	POLR2A	chr3:195934676-195935524	ECC-1	luminal epithelium:	n/a	n/a
36	E2F6	chr3:195934753-195935556	K562	blood:	n/a	n/a
37	MAZ	chr3:195934685-195935459	K562	blood:	n/a	chr3:195935244-195935253
38	USF1	chr3:195935011-195935592	ECC-1	luminal epithelium:	n/a	n/a
39	USF1	chr3:195935075-195935517	K562	blood:	n/a	n/a
40	MAX	chr3:195935044-195935628	H1-hESC	embryonic stem cell:	n/a	chr3:195935244-195935253
41	HMGN3	chr3:195935099-195935382	K562	blood:	n/a	n/a
42	MAX	chr3:195934674-195935641	ECC-1	luminal epithelium:	n/a	chr3:195935244-195935253
43	USF1	chr3:195934999-195935506	H1-hESC	embryonic stem cell:	n/a	n/a
44	CBX3	chr3:195935061-195935503	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:195793504..195812987-chr3:195901613..195938073,113	K562	blood:
2	chr3:195819342..195820879-chr3:195934319..195935878,2	MCF-7	breast:
3	chr3:195935114..195937817-chr3:195940401..195943040,3	K562	blood:
4	chr3:195933623..195937361-chr3:196062207..196065610,4	K562	blood:
5	chr3:195921230..195923242-chr3:195932657..195935379,3	K562	blood:
6	chr3:195871532..195873508-chr3:195933763..195935660,2	K562	blood:
7	chr3:195805990..195808883-chr3:195933159..195936246,3	K562	blood:
8	chr3:195934199..195936662-chr3:196249592..196251250,2	K562	blood:
9	chr3:195928850..195930702-chr3:195933758..195935376,2	K562	blood:
10	chr3:195932805..195936731-chr3:195940753..195943412,3	MCF-7	breast:
11	chr3:195932381..195937980-chr3:195939061..195944688,8	K562	blood:
12	chr3:195934241..195936316-chr3:196228788..196231012,3	K562	blood:
13	chr3:195785800..195787817-chr3:195933272..195935251,2	K562	blood:
14	chr3:195933778..195935330-chr3:195950925..195952641,2	MCF-7	breast:
15	chr3:195933131..195935157-chr3:196159454..196161102,2	K562	blood:
16	chr3:195807839..195810116-chr3:195932911..195935811,2	MCF-7	breast:

Variant related genes	Relation type
SLC51A	TF binding region
ENSG00000163959	Chromatin interaction
ENSG00000072274	Chromatin interaction
ENSG00000252174	Chromatin interaction
ENSG00000273331	Chromatin interaction
ENSG00000163961	Chromatin interaction
ENSG00000222335	Chromatin interaction
ENSG00000145107	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv532213	chr3:195643944-196063636	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	nsv878171	chr3:195677895-195959924	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv1008512	chr3:195709662-195974936	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv432543	chr3:195746690-196015690	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
8	nsv1009105	chr3:195769609-195984388	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv1009811	chr3:195851796-196138071	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
10	nsv878174	chr3:195858887-195949541	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv461131	chr3:195858887-196072442	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	nsv593071	chr3:195858887-196072442	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
13	nsv1009178	chr3:195864466-196081670	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
14	nsv536892	chr3:195864466-196081670	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
15	nsv1003550	chr3:195885340-196159824	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
16	nsv536893	chr3:195885340-196159824	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv878175	chr3:195907653-195973244	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1014159	chr3:195908999-195968512	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	esv32936	chr3:195916045-195940827	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
20	nsv878176	chr3:195926234-195959924	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
21	nsv878177	chr3:195929268-195949541	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv878178	chr3:195929268-195998451	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
23	nsv878179	chr3:195929268-196019680	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
24	esv3414871	chr3:195933780-195935853	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
25	nsv1014563	chr3:195934010-196085951	Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195933600-195935200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr3:195933600-195935400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr3:195933800-195935200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr3:195933800-195935400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr3:195933800-195935600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:195934000-195935200	Enhancers	Primary B cells from cord blood	blood
7	chr3:195934000-195935200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:195934000-195935200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:195934000-195935400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:195934000-195935600	Enhancers	Esophagus	oesophagus
11	chr3:195934200-195935200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:195934200-195935200	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr3:195934200-195935200	Active TSS	Fetal Brain Female	brain
14	chr3:195934200-195935200	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr3:195934200-195935200	Active TSS	Monocytes-CD14+_RO01746	blood
16	chr3:195934200-195935400	Active TSS	Duodenum Mucosa	Duodenum
17	chr3:195934200-195935400	Active TSS	A549	lung
18	chr3:195934200-195935600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr3:195934200-195936200	Enhancers	Lung	lung
20	chr3:195934400-195935200	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr3:195934400-195935200	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr3:195934400-195935200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:195934400-195935200	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr3:195934400-195935200	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr3:195934400-195935400	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr3:195934400-195935400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr3:195934400-195935400	Enhancers	HMEC	breast
28	chr3:195934400-195935600	Enhancers	Primary hematopoietic stem cells	blood
29	chr3:195934400-195935600	Enhancers	Placenta	Placenta
30	chr3:195934400-195935600	Enhancers	Gastric	stomach
31	chr3:195934400-195935600	Enhancers	Pancreas	Pancrea
32	chr3:195934800-195935200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr3:195934800-195935200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr3:195934800-195935200	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr3:195934800-195935200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
36	chr3:195934800-195935200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr3:195934800-195935200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr3:195934800-195935200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:195934800-195935200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:195934800-195935200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:195934800-195935200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr3:195934800-195935400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:195934800-195935400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr3:195934800-195935400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr3:195934800-195935400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:195934800-195935400	Enhancers	Spleen	Spleen
47	chr3:195934800-195935600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:195934800-195936800	Enhancers	HepG2	liver
49	chr3:195935000-195935200	Active TSS	H1 Cell Line	embryonic stem cell
50	chr3:195935000-195935200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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