Variant report

Variant	rs535542350
Chromosome Location	chr15:59817001-59817002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59815837..59817433-chr15:59923383..59925258,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv984079	chr15:59816507-59823194	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59807000-59818000	Enhancers	Primary B cells from peripheral blood	blood
2	chr15:59808000-59817600	Weak transcription	Fetal Brain Female	brain
3	chr15:59812600-59818000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:59814400-59817400	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:59814400-59817800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr15:59814600-59817200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:59814600-59817200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr15:59814800-59817200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:59815200-59817200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr15:59815200-59817600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr15:59815400-59817600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:59815400-59817800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr15:59816000-59818000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:59816200-59817200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr15:59817000-59817200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:59817000-59817200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:59817000-59817200	Active TSS	HepG2	liver
18	chr15:59817000-59817600	Enhancers	Primary B cells from cord blood	blood
19	chr15:59817000-59818000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr15:59817000-59824600	Weak transcription	GM12878-XiMat	blood

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