Variant report

Variant	rs535554080
Chromosome Location	chr4:3829812-3829813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3821388..3825394-chr4:3826472..3830558,5	MCF-7	breast:
2	chr4:3783567..3786061-chr4:3828338..3831241,3	MCF-7	breast:
3	chr4:3829000..3829903-chr4:3870469..3871233,2	MCF-7	breast:
4	chr4:3827600..3830833-chr4:3837890..3839545,3	MCF-7	breast:
5	chr4:3813333..3816584-chr4:3828376..3830899,3	MCF-7	breast:
6	chr4:3825945..3828484-chr4:3829762..3832273,2	K562	blood:
7	chr4:3781470..3783733-chr4:3828633..3831117,2	MCF-7	breast:
8	chr4:3829429..3832344-chr4:3838396..3840116,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933265	chr4:3392824-4283640	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	esv2757918	chr4:3394344-4350986	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2759219	chr4:3394344-4350986	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1000383	chr4:3412585-3839781	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv878471	chr4:3413209-3884998	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv1816543	chr4:3414654-3942867	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv1011554	chr4:3436478-3975772	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
8	nsv537002	chr4:3436478-3975772	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv1012371	chr4:3450810-3878976	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
10	nsv537003	chr4:3450810-3878976	Active TSS Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	nsv998670	chr4:3453787-3909535	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
12	nsv432549	chr4:3487321-3975048	Weak transcription Strong transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	nsv1002558	chr4:3505290-3878976	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv878507	chr4:3737883-3866157	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv878508	chr4:3737883-3884998	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv878509	chr4:3754366-3845104	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv593473	chr4:3792209-3875234	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv10432	chr4:3825407-3831942	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv11773	chr4:3829783-3830793	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3823800-3832400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:3824400-3831200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:3827200-3831400	Enhancers	Liver	Liver
4	chr4:3828200-3830200	Enhancers	Right Ventricle	heart
5	chr4:3828400-3830200	Flanking Active TSS	HepG2	liver
6	chr4:3828400-3833400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr4:3828600-3830200	Enhancers	Lung	lung
8	chr4:3828600-3830200	Enhancers	Ovary	ovary
9	chr4:3828600-3830400	Enhancers	Spleen	Spleen
10	chr4:3828600-3832200	Enhancers	Fetal Brain Male	brain
11	chr4:3828600-3833400	Enhancers	Brain Germinal Matrix	brain
12	chr4:3828600-3833800	Enhancers	Pancreas	Pancrea
13	chr4:3828800-3830600	Enhancers	Fetal Muscle Leg	muscle
14	chr4:3829000-3830000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:3829000-3830000	Enhancers	Adipose Nuclei	Adipose
16	chr4:3829000-3830000	Enhancers	Left Ventricle	heart
17	chr4:3829000-3830000	Enhancers	Right Atrium	heart
18	chr4:3829000-3830000	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr4:3829000-3830200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:3829000-3830400	Enhancers	Duodenum Mucosa	Duodenum
21	chr4:3829200-3830200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr4:3829200-3830200	Enhancers	Brain Substantia Nigra	brain
23	chr4:3829200-3830200	Enhancers	Colon Smooth Muscle	Colon
24	chr4:3829400-3830000	Enhancers	Brain Cingulate Gyrus	brain
25	chr4:3829400-3830000	Enhancers	Fetal Brain Female	brain
26	chr4:3829400-3830000	Enhancers	Fetal Lung	lung
27	chr4:3829400-3830000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr4:3829400-3830000	Enhancers	HSMMtube	muscle
29	chr4:3829400-3830200	Bivalent Enhancer	Fetal Stomach	stomach
30	chr4:3829400-3830200	Enhancers	A549	lung
31	chr4:3829400-3832200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr4:3829600-3830000	Bivalent Enhancer	Placenta	Placenta
33	chr4:3829600-3830000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
34	chr4:3829600-3830400	Enhancers	Gastric	stomach
35	chr4:3829600-3833000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr4:3829600-3835000	Weak transcription	Brain Anterior Caudate	brain
37	chr4:3829800-3830000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:3829800-3830000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:3829800-3830000	Enhancers	Rectal Smooth Muscle	rectum
40	chr4:3829800-3830200	Enhancers	Brain Hippocampus Middle	brain

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