Variant report

Variant	rs535560524
Chromosome Location	chr11:75378353-75378354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75271851..75274774-chr11:75376979..75378673,2	K562	blood:
2	chr11:75369962..75371623-chr11:75376445..75378438,2	K562	blood:

Variant related genes	Relation type
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	esv3428029	chr11:75377804-75381602	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75376600-75380200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:75376600-75380600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:75377000-75378400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr11:75377200-75378400	Active TSS	Fetal Brain Male	brain
5	chr11:75377200-75378600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:75377400-75378400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:75377600-75379400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
8	chr11:75377800-75378400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:75377800-75378400	Enhancers	Fetal Heart	heart
10	chr11:75377800-75378600	Flanking Active TSS	Brain Angular Gyrus	brain
11	chr11:75377800-75378600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
12	chr11:75377800-75379400	Bivalent/Poised TSS	Fetal Stomach	stomach
13	chr11:75377800-75380400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr11:75378000-75378400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
15	chr11:75378000-75378400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:75378000-75378400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
17	chr11:75378000-75378400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
18	chr11:75378000-75378400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
19	chr11:75378000-75378400	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr11:75378000-75378400	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr11:75378000-75378400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
22	chr11:75378000-75378400	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr11:75378000-75378400	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr11:75378000-75378400	Flanking Active TSS	Fetal Brain Female	brain
25	chr11:75378000-75378400	Enhancers	Lung	lung
26	chr11:75378000-75378600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
27	chr11:75378000-75378600	Bivalent Enhancer	Stomach Mucosa	stomach
28	chr11:75378000-75378800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:75378000-75378800	Bivalent Enhancer	Spleen	Spleen
30	chr11:75378000-75379400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:75378000-75379400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr11:75378000-75379400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
33	chr11:75378000-75379400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
34	chr11:75378000-75380200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
35	chr11:75378000-75380200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:75378000-75380400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
37	chr11:75378000-75380400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr11:75378000-75380400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:75378000-75380400	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr11:75378200-75378400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:75378200-75378400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:75378200-75378400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:75378200-75378400	Bivalent Enhancer	Primary B cells from cord blood	blood
44	chr11:75378200-75378400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
45	chr11:75378200-75378400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
46	chr11:75378200-75378400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:75378200-75378400	Enhancers	Aorta	Aorta
48	chr11:75378200-75378400	Enhancers	Liver	Liver
49	chr11:75378200-75378400	Bivalent Enhancer	Esophagus	oesophagus
50	chr11:75378200-75378400	Flanking Active TSS	Right Atrium	heart

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