Variant report

Variant	rs535566410
Chromosome Location	chr4:79698707-79698708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:79695712-79698833	K562	blood:	n/a	n/a
2	TCF7L2	chr4:79698136-79698939	HEK293	kidney:	n/a	chr4:79698178-79698187
3	POLR2A	chr4:79695600-79704800	PBDE	blood:	n/a	n/a
4	POLR2A	chr4:79696044-79699275	MCF10A-Er-Src	breast:	n/a	n/a
5	IRF1	chr4:79698043-79700891	K562	blood:	n/a	chr4:79699678-79699685 chr4:79698149-79698158 chr4:79699001-79699011 chr4:79698997-79699011 chr4:79699699-79699716
6	POLR2A	chr4:79695634-79698859	K562	blood:	n/a	n/a
7	POLR2A	chr4:79697963-79699280	K562	blood:	n/a	n/a
8	IRF1	chr4:79698350-79699734	K562	blood:	n/a	chr4:79699678-79699685 chr4:79699001-79699011 chr4:79698997-79699011 chr4:79699699-79699716
9	CHD1	chr4:79698250-79698789	H1-hESC	embryonic stem cell:	n/a	n/a
10	CHD1	chr4:79698071-79698990	GM12878	blood:	n/a	n/a
11	TBL1XR1	chr4:79698151-79701864	K562	blood:	n/a	n/a
12	POLR2A	chr4:79694957-79698912	GM12891	blood:	n/a	n/a
13	POLR2A	chr4:79695667-79698733	K562	blood:	n/a	n/a
14	POLR2A	chr4:79697859-79698825	K562	blood:	n/a	n/a
15	GATA1	chr4:79698078-79698941	PBDE	blood:	n/a	n/a
16	FOS	chr4:79698012-79698770	MCF10A-Er-Src	breast:	n/a	chr4:79698178-79698188 chr4:79698178-79698188 chr4:79698178-79698188 chr4:79698178-79698188 chr4:79698178-79698187 chr4:79698177-79698188
17	MXI1	chr4:79695444-79698904	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:79522193..79524527-chr4:79697309..79699707,2	MCF-7	breast:
2	chr4:79591975..79594296-chr4:79697576..79699186,2	K562	blood:
3	chr4:79570295..79572982-chr4:79695014..79699413,6	MCF-7	breast:
4	chr4:79562196..79569044-chr4:79695847..79699797,11	MCF-7	breast:
5	chr4:79548752..79551333-chr4:79698595..79700948,2	K562	blood:
6	chr4:79697257..79699576-chr4:79770892..79773352,2	MCF-7	breast:
7	chr4:79686100..79693924-chr4:79694940..79698947,11	MCF-7	breast:
8	chr4:79568346..79573757-chr4:79695931..79699478,7	MCF-7	breast:
9	chr4:79563120..79566472-chr4:79698388..79700680,4	K562	blood:
10	chr4:79557978..79560128-chr4:79697718..79699238,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260278	TF binding region
ENSG00000239793	Chromatin interaction
ENSG00000138756	Chromatin interaction
ENSG00000138772	Chromatin interaction
ENSG00000251019	Chromatin interaction
ENSG00000251442	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	esv3358831	chr4:79696153-79699301	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3368249	chr4:79696578-79699076	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1792429	chr4:79697116-79704210	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1798320	chr4:79697116-79704210	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1801852	chr4:79697116-79704210	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1802642	chr4:79697116-79704210	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv1802703	chr4:79697116-79704210	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv1833723	chr4:79697116-79704210	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	esv1833992	chr4:79697116-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv1835474	chr4:79697116-79704210	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	esv1837381	chr4:79697116-79704210	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	esv1845915	chr4:79697116-79704210	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79695800-79698800	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr4:79696000-79698800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:79696000-79699000	Active TSS	Hela-S3	cervix
4	chr4:79696000-79699600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:79696000-79699800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:79696200-79698800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr4:79696200-79698800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:79696200-79698800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:79696200-79698800	Active TSS	Aorta	Aorta
10	chr4:79696200-79698800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:79696200-79698800	Active TSS	A549	lung
12	chr4:79696200-79699000	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr4:79696200-79699200	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr4:79696200-79699200	Active TSS	H1 Cell Line	embryonic stem cell
15	chr4:79696200-79699200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:79696200-79699200	Active TSS	Fetal Kidney	kidney
17	chr4:79696200-79699200	Active TSS	Fetal Muscle Trunk	muscle
18	chr4:79696200-79699200	Active TSS	Fetal Stomach	stomach
19	chr4:79696200-79699200	Active TSS	Psoas Muscle	Psoas
20	chr4:79696200-79699600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:79696200-79699600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr4:79696200-79699600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:79696200-79699800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:79696200-79699800	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr4:79696200-79699800	Active TSS	Thymus	Thymus
26	chr4:79696200-79699800	Active TSS	NHDF-Ad	bronchial
27	chr4:79696200-79700200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:79696200-79700800	Active TSS	Rectal Smooth Muscle	rectum
29	chr4:79696400-79698800	Bivalent/Poised TSS	HepG2	liver
30	chr4:79696400-79698800	Active TSS	HSMM	muscle
31	chr4:79696400-79699200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:79696400-79699200	Active TSS	Right Ventricle	heart
33	chr4:79696400-79699400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr4:79696400-79699400	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr4:79696400-79699400	Active TSS	GM12878-XiMat	blood
36	chr4:79696400-79700000	Active TSS	K562	blood
37	chr4:79696400-79700800	Active TSS	Fetal Intestine Small	intestine
38	chr4:79696600-79699000	Active TSS	Placenta	Placenta
39	chr4:79696600-79699000	Active TSS	Osteobl	bone
40	chr4:79696600-79699600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:79696600-79699600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:79696600-79699800	Active TSS	HSMMtube	muscle
43	chr4:79696600-79700600	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr4:79696600-79700600	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr4:79696600-79701000	Active TSS	Fetal Intestine Large	intestine
46	chr4:79696600-79701000	Active TSS	NHLF	lung
47	chr4:79696800-79698800	Active TSS	Primary B cells from cord blood	blood
48	chr4:79696800-79699000	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr4:79696800-79699400	Active TSS	Fetal Thymus	thymus
50	chr4:79696800-79699600	Active TSS	Primary B cells from peripheral blood	blood

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