Variant report

Variant	rs535570159
Chromosome Location	chr20:16562117-16562118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762064	chr20:16558260-16568062	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv1058496	chr20:16558260-16575531	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv517032	chr20:16560990-16585314	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv585650	chr20:16561203-16585314	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16556400-16562400	Weak transcription	Left Ventricle	heart
2	chr20:16559600-16562200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr20:16559800-16562200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:16559800-16564600	Enhancers	Fetal Brain Male	brain
5	chr20:16559800-16567000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr20:16560000-16562200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr20:16560000-16562200	Enhancers	NHEK	skin
8	chr20:16560000-16562400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr20:16560000-16562600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:16560200-16562200	Enhancers	Fetal Lung	lung
11	chr20:16560800-16562200	Enhancers	Stomach Smooth Muscle	stomach
12	chr20:16561000-16562400	Enhancers	Fetal Muscle Leg	muscle
13	chr20:16561200-16562400	Enhancers	Small Intestine	intestine
14	chr20:16561200-16563000	Weak transcription	Colonic Mucosa	Colon
15	chr20:16561600-16567200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr20:16562000-16566600	Weak transcription	Fetal Intestine Large	intestine
17	chr20:16562000-16566600	Weak transcription	Fetal Intestine Small	intestine
18	chr20:16562000-16567200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr20:16562000-16568400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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