Variant report

Variant	rs535596699
Chromosome Location	chr4:1240555-1240556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:47)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:47 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr4:1240269-1241634	GM12878	blood:	n/a	chr4:1241327-1241342
2	POLR2A	chr4:1240218-1243708	MCF-7	breast:	n/a	n/a
3	POLR2A	chr4:1239447-1245326	K562	blood:	n/a	n/a
4	NFATC1	chr4:1240277-1240591	GM12878	blood:	n/a	n/a
5	MAX	chr4:1240344-1243648	NB4	blood:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
6	FOXM1	chr4:1240322-1240673	GM12878	blood:	n/a	n/a
7	EBF1	chr4:1240152-1240648	GM12878	blood:	n/a	n/a
8	POLR2A	chr4:1240276-1244249	GM18505	blood:	n/a	n/a
9	POLR2A	chr4:1240466-1244395	GM12892	blood:	n/a	n/a
10	POLR2A	chr4:1240322-1244504	GM12891	blood:	n/a	n/a
11	ESR1	chr4:1240265-1240585	T-47D	breast:	n/a	n/a
12	RUNX3	chr4:1240316-1240592	GM12878	blood:	n/a	n/a
13	POLR2A	chr4:1240296-1244152	GM18951	blood:	n/a	n/a
14	POLR2A	chr4:1238918-1244163	GM12878	blood:	n/a	n/a
15	POLR2A	chr4:1239852-1245445	GM12892	blood:	n/a	n/a
16	MXI1	chr4:1240283-1244361	GM12878	blood:	n/a	chr4:1242014-1242023
17	POLR2A	chr4:1240461-1240711	HCT-116	colon:	n/a	n/a
18	MAZ	chr4:1240520-1241505	GM12878	blood:	n/a	chr4:1241434-1241443 chr4:1241433-1241443
19	POLR2A	chr4:1239738-1242639	GM12878	blood:	n/a	n/a
20	POLR2A	chr4:1239867-1245313	HepG2	liver:	n/a	n/a
21	POLR2A	chr4:1240423-1240561	MCF10A-Er-Src	breast:	n/a	n/a
22	POLR2A	chr4:1239883-1240558	GM12878	blood:	n/a	n/a
23	POLR2A	chr4:1238878-1245469	GM12878	blood:	n/a	n/a
24	WRNIP1	chr4:1239911-1241478	GM12878	blood:	n/a	n/a
25	POLR2A	chr4:1239998-1245234	Raji	blood:	n/a	n/a
26	PML	chr4:1240389-1241248	GM12878	blood:	n/a	n/a
27	POLR2A	chr4:1239874-1244526	GM19193	blood:	n/a	n/a
28	POLR2A	chr4:1239891-1245200	K562	blood:	n/a	n/a
29	EBF1	chr4:1240228-1240653	GM12878	blood:	n/a	n/a
30	EBF1	chr4:1240193-1240779	GM12878	blood:	n/a	n/a
31	POLR2A	chr4:1240264-1240577	GM12878	blood:	n/a	n/a
32	NR2F2	chr4:1240177-1240760	MCF-7	breast:	n/a	n/a
33	POLR2A	chr4:1239926-1242561	SK-N-MC	brain:	n/a	n/a
34	BHLHE40	chr4:1240413-1241122	GM12878	blood:	n/a	n/a
35	POLR2A	chr4:1240268-1241039	K562	blood:	n/a	n/a
36	POLR2A	chr4:1240150-1240680	ECC-1	luminal epithelium:	n/a	n/a
37	MAX	chr4:1240279-1244328	GM12878	blood:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
38	MTA3	chr4:1240167-1242578	GM12878	blood:	n/a	n/a
39	ESR1	chr4:1240257-1240667	T-47D	breast:	n/a	n/a
40	POLR2A	chr4:1239896-1243964	GM18526	blood:	n/a	n/a
41	POLR2A	chr4:1240490-1242750	PFSK-1	brain:	n/a	n/a
42	POLR2A	chr4:1239940-1240582	ECC-1	luminal epithelium:	n/a	n/a
43	POLR2A	chr4:1239725-1241542	GM12892	blood:	n/a	n/a
44	MAX	chr4:1240246-1240691	MCF-7	breast:	n/a	n/a
45	CHD2	chr4:1240327-1241586	GM12878	blood:	n/a	n/a
46	EP300	chr4:1240449-1241481	GM12878	blood:	n/a	n/a
47	POLR2A	chr4:1239817-1245060	GM12878	blood:	n/a	n/a

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:1128219..1129832-chr4:1239417..1241300,2	MCF-7	breast:
2	chr4:1215555..1220351-chr4:1239288..1242893,7	K562	blood:
3	chr12:6977980..6980393-chr4:1240474..1243068,2	MCF-7	breast:
4	chr17:57915852..57918679-chr4:1239651..1241849,2	MCF-7	breast:
5	chr4:1066453..1068289-chr4:1240208..1241974,2	MCF-7	breast:
6	chr4:925435..927433-chr4:1239888..1241441,2	MCF-7	breast:
7	chr4:1207048..1210414-chr4:1237792..1241348,3	K562	blood:
8	chr4:1201438..1204113-chr4:1239051..1243365,5	MCF-7	breast:
9	chr4:1158166..1163360-chr4:1238498..1245354,13	MCF-7	breast:
10	chr20:58514614..58517164-chr4:1239495..1242214,2	MCF-7	breast:
11	chr4:1236833..1250005-chr4:1276188..1292579,54	MCF-7	breast:
12	chr4:1236808..1249320-chr4:1336333..1343819,66	MCF-7	breast:
13	chr4:1013317..1015069-chr4:1239149..1240689,2	K562	blood:
14	chr4:1238043..1241970-chr4:1281719..1285287,6	MCF-7	breast:
15	chr4:1051885..1054795-chr4:1239634..1242106,2	MCF-7	breast:
16	chr4:1240390..1245150-chr4:1578422..1582537,5	MCF-7	breast:
17	chr4:1235141..1249133-chr4:1336906..1347308,118	MCF-7	breast:
18	chr4:1003725..1006599-chr4:1238644..1243840,5	MCF-7	breast:
19	chr4:1239502..1245378-chr4:1336996..1344860,21	K562	blood:
20	chr4:1239325..1241522-chr4:1343447..1345640,2	K562	blood:
21	chr4:990681..994690-chr4:1238010..1243594,6	MCF-7	breast:
22	chr4:1189059..1190794-chr4:1239654..1242349,2	K562	blood:
23	chr1:151817465..151820219-chr4:1240046..1241546,2	MCF-7	breast:
24	chr4:1020274..1022764-chr4:1238213..1242920,4	MCF-7	breast:
25	chr4:1204863..1206646-chr4:1239464..1241348,2	K562	blood:
26	chr4:1216435..1221821-chr4:1240439..1244617,5	MCF-7	breast:
27	chr4:1121885..1124644-chr4:1239644..1241550,2	MCF-7	breast:
28	chr4:1240362..1242023-chr4:1330911..1332884,2	MCF-7	breast:
29	chr4:1238004..1248980-chr4:1275065..1286840,30	K562	blood:
30	chr4:1238004..1246805-chr4:1279798..1288475,25	K562	blood:
31	chr4:1209959..1212251-chr4:1238476..1240905,2	MCF-7	breast:

No data

Variant related genes	Relation type
CTBP1	TF binding region
CTBP1-AS2	TF binding region
ENSG00000244459	Chromatin interaction
ENSG00000250259	Chromatin interaction
ENSG00000127415	Chromatin interaction
ENSG00000178950	Chromatin interaction
ENSG00000132825	Chromatin interaction
ENSG00000273179	Chromatin interaction
ENSG00000159692	Chromatin interaction
ENSG00000178222	Chromatin interaction
ENSG00000163945	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000111669	Chromatin interaction
ENSG00000159674	Chromatin interaction
ENSG00000196227	Chromatin interaction
ENSG00000127418	Chromatin interaction
ENSG00000127419	Chromatin interaction
ENSG00000090316	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
6	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
10	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
11	nsv461153	chr4:1174861-1254930	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv593279	chr4:1174861-1254930	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv461154	chr4:1179213-1254930	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	nsv593280	chr4:1179213-1254930	Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
15	nsv878332	chr4:1179213-1254930	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
17	nsv878333	chr4:1193832-1254930	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv1002097	chr4:1212573-1320086	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv536986	chr4:1212573-1320086	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	esv1811773	chr4:1228251-1287474	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
23	esv1800629	chr4:1228451-1287274	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	esv1812851	chr4:1228451-1287274	Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
25	esv1823612	chr4:1228451-1287274	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
26	esv1825633	chr4:1228451-1287274	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
27	esv1844406	chr4:1230397-1243775	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
28	esv1836927	chr4:1231363-1244037	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
29	esv1838677	chr4:1231540-1274734	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
30	nsv822433	chr4:1232688-1246206	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
31	nsv878334	chr4:1232910-1254930	Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
32	esv1839490	chr4:1237014-1254930	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
33	nsv878335	chr4:1237014-1254930	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
34	nsv593282	chr4:1238363-1243573	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
35	nsv878336	chr4:1238859-1254930	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
36	nsv878337	chr4:1240091-1254930	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1222000-1240800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:1233400-1240600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:1234600-1240800	Genic enhancers	Spleen	Spleen
4	chr4:1235000-1240800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:1235000-1241200	Weak transcription	Aorta	Aorta
6	chr4:1235200-1240800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:1235400-1240600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:1235400-1240600	Genic enhancers	Fetal Muscle Leg	muscle
9	chr4:1235400-1240800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:1235400-1241000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:1235600-1240600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:1235600-1240600	Enhancers	Right Atrium	heart
13	chr4:1235600-1241000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:1235600-1241000	Enhancers	Ovary	ovary
15	chr4:1235800-1240800	Enhancers	Brain Angular Gyrus	brain
16	chr4:1236000-1240600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:1236200-1240600	Genic enhancers	Fetal Stomach	stomach
18	chr4:1236400-1241000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:1237000-1240800	Genic enhancers	Gastric	stomach
20	chr4:1237000-1240800	Enhancers	Psoas Muscle	Psoas
21	chr4:1237000-1241800	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr4:1237200-1240800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:1237800-1240800	Enhancers	Lung	lung
24	chr4:1238000-1241400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr4:1238400-1240600	Enhancers	Fetal Heart	heart
26	chr4:1238400-1241400	Flanking Active TSS	Pancreas	Pancrea
27	chr4:1238600-1240600	Enhancers	Placenta	Placenta
28	chr4:1238600-1240600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
29	chr4:1238800-1241200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:1239200-1240600	Enhancers	Placenta Amnion	Placenta Amnion
31	chr4:1239200-1241000	Enhancers	Small Intestine	intestine
32	chr4:1239400-1240800	Enhancers	Fetal Brain Male	brain
33	chr4:1239400-1240800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr4:1239400-1241400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:1239400-1241600	Flanking Active TSS	Colonic Mucosa	Colon
36	chr4:1239600-1240800	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr4:1239600-1241400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:1239600-1241600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr4:1239800-1240600	Enhancers	Fetal Lung	lung
40	chr4:1239800-1241000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:1239800-1241000	Flanking Active TSS	GM12878-XiMat	blood
42	chr4:1239800-1241200	Transcr. at gene 5' and 3'	NHEK	skin
43	chr4:1239800-1241400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:1239800-1241400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:1239800-1241400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr4:1239800-1241400	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr4:1239800-1241800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr4:1239800-1241800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:1239800-1242000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:1240000-1240600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links