Variant report

Variant	rs535624153
Chromosome Location	chr18:8962113-8962114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3372463	chr18:8961352-8965650	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8949800-8962200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:8958200-8962400	Weak transcription	Fetal Muscle Leg	muscle
3	chr18:8959400-8969000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:8960000-8962200	Enhancers	Fetal Kidney	kidney
5	chr18:8960000-8962600	Weak transcription	K562	blood
6	chr18:8960000-8963800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:8960000-8963800	Enhancers	HMEC	breast
8	chr18:8960200-8962600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr18:8960200-8962600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:8960200-8962600	Weak transcription	Fetal Heart	heart
11	chr18:8960200-8962800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:8960200-8963600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:8960200-8964400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr18:8960200-8970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr18:8960400-8963600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr18:8960600-8963400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr18:8960800-8962200	Enhancers	NHLF	lung
18	chr18:8960800-8962800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr18:8961000-8963400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr18:8961200-8963400	Enhancers	HepG2	liver
21	chr18:8961400-8963200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr18:8961400-8963400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr18:8961600-8962200	Enhancers	Gastric	stomach
24	chr18:8961600-8962400	Enhancers	Liver	Liver
25	chr18:8961600-8962600	Weak transcription	HSMMtube	muscle
26	chr18:8961600-8963400	Enhancers	A549	lung
27	chr18:8961600-8963600	Enhancers	NHEK	skin
28	chr18:8961600-8963800	Enhancers	Pancreas	Pancrea
29	chr18:8961800-8962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr18:8961800-8962800	Weak transcription	Stomach Mucosa	stomach
31	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
32	chr18:8962000-8963800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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