Variant report

Variant	rs535631088
Chromosome Location	chr10:93748289-93748290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93744030..93746572-chr10:93747290..93749067,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr10:93704800-93807400	Weak transcription	Gastric	stomach
4	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:93710000-93750200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
7	chr10:93718400-93774000	Weak transcription	Spleen	Spleen
8	chr10:93719400-93761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:93720000-93757400	Weak transcription	Small Intestine	intestine
10	chr10:93720400-93757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
12	chr10:93728000-93757400	Weak transcription	Fetal Brain Male	brain
13	chr10:93728600-93751600	Weak transcription	K562	blood
14	chr10:93729800-93765600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:93730400-93750200	Weak transcription	Fetal Intestine Small	intestine
16	chr10:93734600-93750200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:93734800-93763400	Strong transcription	Dnd41	blood
18	chr10:93735400-93750200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:93735800-93750600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:93736200-93749200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:93736200-93755400	Weak transcription	Esophagus	oesophagus
22	chr10:93736200-93784400	Weak transcription	Pancreas	Pancrea
23	chr10:93737400-93750800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:93738800-93750200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:93739400-93750200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:93739800-93750000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:93739800-93750000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:93740000-93749800	Strong transcription	Primary B cells from cord blood	blood
29	chr10:93740000-93750000	Strong transcription	Primary T cells from cord blood	blood
30	chr10:93740000-93750200	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:93740000-93750200	Strong transcription	Liver	Liver
32	chr10:93740000-93750800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr10:93740200-93749600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:93740200-93750000	Strong transcription	Primary hematopoietic stem cells	blood
35	chr10:93740200-93750000	Strong transcription	HSMM	muscle
36	chr10:93740200-93750200	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr10:93740200-93750200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:93740200-93750400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:93740200-93750400	Strong transcription	NH-A	brain
40	chr10:93740200-93766200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:93740400-93750600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr10:93740400-93761000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr10:93740400-93764400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr10:93740400-93770800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:93741000-93750400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:93741200-93750400	Strong transcription	Adipose Nuclei	Adipose
47	chr10:93741400-93749800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr10:93741400-93750000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr10:93741400-93761400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:93741600-93750200	Strong transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links