Variant report

Variant	rs535660830
Chromosome Location	chr5:37836197-37836198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37834038..37837439-chr5:37839505..37841588,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168621	Chromatin interaction
ENSG00000248587	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	esv1844348	chr5:37835398-37840642	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1851519	chr5:37835398-37840642	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37833400-37836600	Weak transcription	NHEK	skin
2	chr5:37834200-37836600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
3	chr5:37834200-37837800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
4	chr5:37834200-37838200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
5	chr5:37834200-37838400	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr5:37834200-37839000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:37834200-37841000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr5:37834400-37836400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
9	chr5:37834400-37836800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:37834400-37836800	Bivalent Enhancer	Placenta	Placenta
11	chr5:37834400-37838800	Active TSS	Colon Smooth Muscle	Colon
12	chr5:37834400-37840600	Bivalent Enhancer	Fetal Brain Male	brain
13	chr5:37834400-37841400	Bivalent/Poised TSS	Colonic Mucosa	Colon
14	chr5:37834600-37836200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr5:37834600-37836400	Weak transcription	HSMMtube	muscle
16	chr5:37834600-37836600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr5:37834600-37837800	Active TSS	Rectal Smooth Muscle	rectum
18	chr5:37834800-37836800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
19	chr5:37835000-37836600	Weak transcription	Right Atrium	heart
20	chr5:37835000-37839800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
21	chr5:37835200-37836400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:37835200-37836400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
23	chr5:37835200-37836400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr5:37835200-37836400	Weak transcription	Pancreas	Pancrea
25	chr5:37835200-37836600	Weak transcription	Gastric	stomach
26	chr5:37835200-37836600	Weak transcription	Ovary	ovary
27	chr5:37835200-37837000	Flanking Active TSS	Osteobl	bone
28	chr5:37835400-37836200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:37835400-37836200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:37835400-37836400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
31	chr5:37835400-37836400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:37835400-37836400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:37835600-37836200	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr5:37835600-37836400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:37835600-37836600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:37835800-37836200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
37	chr5:37835800-37836200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
38	chr5:37835800-37836200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:37835800-37836200	Flanking Active TSS	NHDF-Ad	bronchial
40	chr5:37835800-37836600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr5:37835800-37840000	Bivalent Enhancer	Spleen	Spleen
42	chr5:37836000-37836200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
43	chr5:37836000-37836200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
44	chr5:37836000-37836200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
45	chr5:37836000-37836200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:37836000-37836200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
47	chr5:37836000-37836200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
48	chr5:37836000-37836400	Bivalent Enhancer	Brain Hippocampus Middle	brain
49	chr5:37836000-37836600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:37836000-37836800	Flanking Bivalent TSS/Enh	NH-A	brain

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