Variant report

Variant	rs535674237
Chromosome Location	chr6:132406027-132406028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr6:132405798-132406523	SK-N-SH	brain:	n/a	n/a
2	FOSL2	chr6:132405793-132406262	A549	lung:	n/a	n/a
3	POLR2A	chr6:132405737-132407204	HUVEC	blood vessel:	n/a	n/a
4	GATA2	chr6:132405411-132406648	HUVEC	blood vessel:	n/a	chr6:132406153-132406167 chr6:132406181-132406191 chr6:132405940-132405950
5	PBX3	chr6:132405790-132406594	SK-N-SH	brain:	n/a	n/a
6	EP300	chr6:132405614-132406693	SK-N-SH	brain:	n/a	chr6:132405938-132405952 chr6:132405942-132405951
7	SIN3AK20	chr6:132405911-132406485	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr6:132405748-132407257	SK-N-SH	brain:	n/a	n/a
9	TCF12	chr6:132405822-132406686	SK-N-SH	brain:	n/a	n/a
10	MAX	chr6:132405803-132406640	SK-N-SH	brain:	n/a	n/a
11	MEF2A	chr6:132405843-132406920	SK-N-SH	brain:	n/a	chr6:132406167-132406188 chr6:132406169-132406184 chr6:132406172-132406181 chr6:132406168-132406184
12	FOXM1	chr6:132405578-132406776	SK-N-SH	brain:	n/a	n/a
13	ZBTB33	chr6:132405873-132406368	SK-N-SH	brain:	n/a	n/a
14	FOXM1	chr6:132405803-132406411	ECC-1	luminal epithelium:	n/a	n/a
15	JUND	chr6:132405815-132406535	SK-N-SH	brain:	n/a	n/a
16	POLR2A	chr6:132406000-132406419	SK-N-SH	brain:	n/a	n/a
17	FOXM1	chr6:132405778-132406437	SK-N-SH	brain:	n/a	n/a
18	GATA3	chr6:132405949-132406354	T-47D	breast:	n/a	chr6:132406181-132406191
19	MEF2A	chr6:132405835-132406627	SK-N-SH	brain:	n/a	chr6:132406167-132406188 chr6:132406169-132406184 chr6:132406172-132406181 chr6:132406168-132406184
20	TCF12	chr6:132405783-132407410	SK-N-SH	brain:	n/a	n/a
21	JUND	chr6:132405890-132406442	T-47D	breast:	n/a	n/a
22	EP300	chr6:132405621-132406813	SK-N-SH	brain:	n/a	chr6:132405938-132405952 chr6:132405942-132405951
23	GATA3	chr6:132405812-132406497	A549	lung:	n/a	chr6:132406181-132406191 chr6:132405940-132405950
24	FOSL2	chr6:132405878-132406417	SK-N-SH	brain:	n/a	n/a
25	EP300	chr6:132405957-132406263	SK-N-SH_RA	brain:	n/a	n/a
26	TEAD4	chr6:132405812-132406409	ECC-1	luminal epithelium:	n/a	n/a
27	FOXA1	chr6:132406014-132406195	T-47D	breast:	n/a	n/a
28	EP300	chr6:132405977-132406439	T-47D	breast:	n/a	n/a
29	YY1	chr6:132405909-132406709	SK-N-SH	brain:	n/a	n/a
30	TEAD4	chr6:132405911-132406348	ECC-1	luminal epithelium:	n/a	n/a
31	NFIC	chr6:132405766-132406606	SK-N-SH	brain:	n/a	n/a
32	POLR2A	chr6:132405733-132407250	HUVEC	blood vessel:	n/a	n/a
33	CEBPB	chr6:132405806-132406994	IMR90	lung:	n/a	n/a
34	PBX3	chr6:132405792-132406546	SK-N-SH	brain:	n/a	n/a
35	RAD21	chr6:132405750-132406661	IMR90	lung:	n/a	n/a
36	RXRA	chr6:132405775-132406607	SK-N-SH	brain:	n/a	n/a
37	JUND	chr6:132405802-132406610	SK-N-SH	brain:	n/a	n/a
38	GATA3	chr6:132405616-132407448	SK-N-SH	brain:	n/a	chr6:132407106-132407115 chr6:132407106-132407115 chr6:132406181-132406191 chr6:132407106-132407116 chr6:132405940-132405950
39	FOSL2	chr6:132405847-132406539	SK-N-SH	brain:	n/a	n/a
40	GATA3	chr6:132405921-132406388	T-47D	breast:	n/a	chr6:132406181-132406191 chr6:132405940-132405950
41	TEAD4	chr6:132405753-132406562	SK-N-SH	brain:	n/a	n/a
42	MAFK	chr6:132405798-132406579	IMR90	lung:	n/a	n/a
43	TCF12	chr6:132405876-132406390	A549	lung:	n/a	n/a
44	TEAD4	chr6:132405731-132406466	SK-N-SH	brain:	n/a	n/a
45	POLR2A	chr6:132405775-132406682	HUVEC	blood vessel:	n/a	n/a
46	POLR2A	chr6:132405772-132407109	IMR90	lung:	n/a	n/a
47	JUN	chr6:132405775-132406471	HUVEC	blood vessel:	n/a	n/a
48	GATA3	chr6:132405785-132406850	SK-N-SH	brain:	n/a	chr6:132406181-132406191 chr6:132405940-132405950
49	EP300	chr6:132405844-132406544	ECC-1	luminal epithelium:	n/a	chr6:132405938-132405952 chr6:132405942-132405951
50	FOS	chr6:132405828-132406680	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000236166	TF binding region
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132396000-132406200	Weak transcription	Aorta	Aorta
2	chr6:132402400-132406400	Weak transcription	Ovary	ovary
3	chr6:132403400-132406200	Enhancers	HUVEC	blood vessel
4	chr6:132403400-132406400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:132403800-132406200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132404000-132406400	Enhancers	HSMMtube	muscle
7	chr6:132404000-132406400	Enhancers	Osteobl	bone
8	chr6:132404000-132410400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:132404200-132406200	Enhancers	Fetal Heart	heart
10	chr6:132404600-132406200	Enhancers	NH-A	brain
11	chr6:132404600-132407600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:132405000-132406200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:132405000-132406600	Enhancers	NHLF	lung
14	chr6:132405000-132407000	Enhancers	HMEC	breast
15	chr6:132405000-132407200	Enhancers	Placenta	Placenta
16	chr6:132405000-132407600	Enhancers	NHEK	skin
17	chr6:132405000-132408400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:132405200-132406200	Enhancers	HSMM	muscle
19	chr6:132405200-132407200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:132405400-132406200	Enhancers	Colon Smooth Muscle	Colon
21	chr6:132405400-132406200	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:132405400-132406200	Enhancers	GM12878-XiMat	blood
23	chr6:132405400-132406200	Enhancers	NHDF-Ad	bronchial
24	chr6:132405400-132406600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:132405400-132407200	Enhancers	Fetal Muscle Leg	muscle
26	chr6:132405400-132407200	Enhancers	Right Atrium	heart
27	chr6:132405400-132407600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:132405800-132406400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:132405800-132406800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:132405800-132407000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:132405800-132409600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:132406000-132406200	Enhancers	HepG2	liver
33	chr6:132406000-132406400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:132406000-132406400	Enhancers	Brain Substantia Nigra	brain
35	chr6:132406000-132406800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:132406000-132407000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:132406000-132407600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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