Variant report

Variant	rs535685783
Chromosome Location	chr3:142091702-142091703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:142091639-142091793	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142090981..142093702-chr3:142096460..142098361,2	K562	blood:
2	chr3:142089971..142093196-chr3:142095557..142099193,3	K562	blood:

Variant related genes	Relation type
XRN1	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2757013	chr3:141756541-142094631	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv522549	chr3:141812759-142164735	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv520523	chr3:141818850-142110818	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	esv2763767	chr3:141820945-142101554	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	esv34483	chr3:141853926-142094631	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv877556	chr3:141898980-142331360	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
10	nsv523945	chr3:141933649-142219542	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv1000083	chr3:141956718-142172666	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	nsv877557	chr3:142090402-142150204	Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142046400-142112400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:142051800-142093000	Weak transcription	Hela-S3	cervix
3	chr3:142057400-142111400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:142059400-142111400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:142060800-142111200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:142061800-142092200	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:142062000-142092000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:142063600-142097200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:142063600-142104200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:142063600-142104600	Strong transcription	Placenta	Placenta
11	chr3:142063600-142111200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:142064200-142092000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:142064600-142111400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:142066800-142115000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:142072400-142114600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:142074000-142113800	Weak transcription	HMEC	breast
17	chr3:142074600-142104000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:142075800-142101000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:142075800-142103600	Weak transcription	HSMMtube	muscle
20	chr3:142076000-142100800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:142076000-142103800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:142076000-142136400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:142076200-142101200	Weak transcription	Brain Substantia Nigra	brain
24	chr3:142076200-142104200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:142076600-142093200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:142076800-142094400	Weak transcription	Colonic Mucosa	Colon
27	chr3:142076800-142106000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:142076800-142106400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:142076800-142106600	Weak transcription	Spleen	Spleen
30	chr3:142076800-142120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:142076800-142138200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:142077200-142106000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:142078800-142103600	Weak transcription	Fetal Heart	heart
34	chr3:142080000-142093000	Weak transcription	HSMM	muscle
35	chr3:142080000-142114000	Weak transcription	NHLF	lung
36	chr3:142081800-142092000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:142083200-142093600	Weak transcription	Brain Angular Gyrus	brain
38	chr3:142083200-142106600	Weak transcription	Gastric	stomach
39	chr3:142083200-142113800	Weak transcription	Small Intestine	intestine
40	chr3:142083200-142114200	Weak transcription	A549	lung
41	chr3:142083400-142093000	Weak transcription	K562	blood
42	chr3:142083400-142093600	Weak transcription	Fetal Brain Male	brain
43	chr3:142083400-142093600	Weak transcription	Fetal Kidney	kidney
44	chr3:142083400-142094600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:142083400-142096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr3:142083400-142099000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:142083400-142099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:142083400-142099400	Weak transcription	Lung	lung
49	chr3:142083400-142114800	Weak transcription	HepG2	liver
50	chr3:142083600-142099800	Weak transcription	Placenta Amnion	Placenta Amnion

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