Variant report

Variant	rs535710965
Chromosome Location	chr6:140098759-140098760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140091742..140094487-chr6:140097779..140099981,2	K562	blood:
2	chr6:140096649..140099517-chr6:140260643..140262599,2	K562	blood:
3	chr6:140091742..140094049-chr6:140096525..140099279,2	K562	blood:
4	chr6:139694049..139695787-chr6:140096448..140099243,2	K562	blood:
5	chr6:139930810..139933752-chr6:140097356..140098943,2	K562	blood:
6	chr6:139695846..139697718-chr6:140097081..140099970,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140086000-140099400	Weak transcription	Ovary	ovary
2	chr6:140086000-140101000	Weak transcription	Left Ventricle	heart
3	chr6:140087400-140099200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:140088200-140100000	Weak transcription	NHDF-Ad	bronchial
5	chr6:140096200-140100800	Enhancers	K562	blood
6	chr6:140096400-140099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:140096400-140100200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:140096400-140100200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:140096400-140100400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:140096400-140100400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:140096400-140100800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:140096600-140100400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:140096800-140099000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:140096800-140099000	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:140096800-140099600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:140097000-140099600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:140097000-140099600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:140097000-140100000	Enhancers	Fetal Heart	heart
19	chr6:140097000-140100200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:140097000-140100600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:140097000-140101000	Enhancers	Rectal Smooth Muscle	rectum
22	chr6:140097200-140099200	Enhancers	Brain Germinal Matrix	brain
23	chr6:140097200-140099200	Enhancers	Colon Smooth Muscle	Colon
24	chr6:140097200-140099600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:140097200-140100200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:140097200-140100400	Enhancers	Fetal Brain Male	brain
27	chr6:140097400-140099400	Weak transcription	NHLF	lung
28	chr6:140097400-140099600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:140097400-140100600	Enhancers	Fetal Stomach	stomach
30	chr6:140097600-140099000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:140098000-140098800	Weak transcription	Fetal Kidney	kidney
32	chr6:140098000-140099000	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:140098000-140099400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:140098000-140099400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:140098000-140099400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:140098000-140100800	Enhancers	Fetal Brain Female	brain
37	chr6:140098200-140100200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:140098400-140099000	Enhancers	Stomach Mucosa	stomach
39	chr6:140098400-140099600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:140098600-140099400	Weak transcription	Pancreas	Pancrea
41	chr6:140098600-140099600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr6:140098600-140100000	Weak transcription	Fetal Lung	lung
43	chr6:140098600-140100200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:140098600-140100400	Enhancers	Skeletal Muscle Female	skeletal muscle

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