Variant report

Variant	rs535716756
Chromosome Location	chr1:212577789-212577790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212577333..212581219-chr1:212586593..212589230,4	MCF-7	breast:
2	chr1:212577272..212579979-chr1:212586236..212589542,6	K562	blood:
3	chr1:212577419..212579979-chr1:212586021..212589542,6	K562	blood:
4	chr1:212569599..212572522-chr1:212576653..212579387,2	K562	blood:

Variant related genes	Relation type
ENSG00000065600	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv997629	chr1:212404489-212658785	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535286	chr1:212404489-212658785	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	esv1828436	chr1:212577765-212591863	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212526800-212582800	Weak transcription	Fetal Brain Male	brain
2	chr1:212528400-212583000	Weak transcription	Fetal Kidney	kidney
3	chr1:212553200-212578400	Weak transcription	K562	blood
4	chr1:212556800-212587600	Weak transcription	Small Intestine	intestine
5	chr1:212558600-212578800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:212558600-212580000	Weak transcription	Left Ventricle	heart
7	chr1:212560200-212578400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:212560400-212580200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:212560600-212578200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:212560600-212578800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:212560600-212580200	Weak transcription	HSMMtube	muscle
12	chr1:212560600-212582000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:212560600-212582000	Weak transcription	Gastric	stomach
14	chr1:212561000-212578000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:212561000-212579800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:212561000-212579800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:212561000-212580000	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:212561000-212582400	Weak transcription	Aorta	Aorta
19	chr1:212562000-212578400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:212564200-212578800	Weak transcription	Esophagus	oesophagus
21	chr1:212564600-212577800	Weak transcription	Spleen	Spleen
22	chr1:212564600-212578600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:212564600-212579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:212569600-212582600	Weak transcription	Ovary	ovary
25	chr1:212570400-212578800	Weak transcription	Fetal Stomach	stomach
26	chr1:212570600-212577800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:212570600-212578400	Weak transcription	HepG2	liver
28	chr1:212570600-212582000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr1:212570800-212580000	Weak transcription	Fetal Lung	lung
30	chr1:212571000-212578600	Weak transcription	Brain Anterior Caudate	brain
31	chr1:212571000-212586200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:212571200-212578400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr1:212571200-212580000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:212571400-212577800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr1:212571400-212580000	Weak transcription	NH-A	brain
36	chr1:212571600-212578800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr1:212571800-212578600	Weak transcription	Fetal Brain Female	brain
38	chr1:212571800-212579800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr1:212572000-212577800	Weak transcription	Fetal Muscle Leg	muscle
40	chr1:212572000-212578400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:212572000-212579800	Weak transcription	Brain Germinal Matrix	brain
42	chr1:212572200-212578400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr1:212572600-212582000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr1:212572600-212585000	Strong transcription	Dnd41	blood
45	chr1:212572800-212585600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:212573000-212578600	Weak transcription	Primary B cells from cord blood	blood
47	chr1:212573000-212579800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr1:212573200-212580000	Weak transcription	Fetal Intestine Small	intestine
49	chr1:212573400-212580400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:212573400-212582200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links