Variant report

Variant	rs535825039
Chromosome Location	chr16:48079648-48079649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1798	chr16:48035871-48080541	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3375126	chr16:48075651-48080349	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv15426	chr16:48078692-48084956	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48076200-48088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:48077200-48081400	Weak transcription	Spleen	Spleen
3	chr16:48077400-48081200	Weak transcription	Fetal Brain Male	brain
4	chr16:48077400-48086000	Weak transcription	Fetal Brain Female	brain
5	chr16:48077600-48081000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr16:48078600-48079800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr16:48079200-48087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:48079400-48079800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:48079400-48087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:48079600-48080800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links