Variant report

Variant	rs535865262
Chromosome Location	chr4:103784503-103784504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:103781973..103785521-chr4:103788128..103792048,4	MCF-7	breast:
2	chr4:103767414..103770049-chr4:103783423..103785065,2	MCF-7	breast:
3	chr4:103741330..103752134-chr4:103778393..103796398,92	K562	blood:
4	chr4:103775754..103778384-chr4:103782833..103785617,2	MCF-7	breast:
5	chr4:103782723..103785636-chr4:103787155..103789919,2	MCF-7	breast:
6	chr4:103747316..103751264-chr4:103783852..103786816,4	MCF-7	breast:
7	chr4:103757925..103760228-chr4:103782951..103785960,3	K562	blood:
8	chr4:103746438..103750337-chr4:103782400..103786138,6	MCF-7	breast:
9	chr4:103736995..103756245-chr4:103778393..103800311,117	K562	blood:
10	chr4:103782734..103784847-chr4:103785870..103787705,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145354	Chromatin interaction
ENSG00000252739	Chromatin interaction
ENSG00000246560	Chromatin interaction
ENSG00000109332	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594957	chr4:103728010-103870091	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv1802717	chr4:103765156-103870091	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv10541	chr4:103778446-103785639	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	esv3465869	chr4:103783563-103787412	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103750800-103788000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:103765400-103788800	Weak transcription	Left Ventricle	heart
3	chr4:103779000-103787600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:103780000-103788000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:103780200-103789200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:103780400-103788800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:103780800-103788000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:103781000-103785000	Weak transcription	Primary T cells from cord blood	blood
9	chr4:103781000-103788800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:103781000-103789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:103781200-103785800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:103781200-103788600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:103781800-103788000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:103781800-103789600	Weak transcription	Fetal Brain Male	brain
15	chr4:103782000-103788000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:103782200-103785000	Weak transcription	Liver	Liver
17	chr4:103782200-103788600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:103782200-103788600	Weak transcription	Fetal Thymus	thymus
19	chr4:103782200-103788800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:103782200-103788800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:103782400-103788800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:103782400-103788800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:103782400-103788800	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:103782400-103789200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:103782400-103789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:103782600-103788400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:103782600-103789000	Weak transcription	Fetal Stomach	stomach
28	chr4:103782800-103785200	Strong transcription	Dnd41	blood
29	chr4:103783200-103786600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr4:103783400-103788800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:103783600-103784800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:103784000-103784600	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr4:103784000-103785800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:103784000-103788600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:103784000-103788800	Weak transcription	Primary B cells from cord blood	blood
36	chr4:103784200-103785200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:103784200-103788600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:103784400-103785200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:103784400-103786800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:103784400-103788800	Weak transcription	Primary monocytes fromperipheralblood	blood

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