Variant report

Variant	rs535975777
Chromosome Location	chr9:98135207-98135208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972426	chr9:98134160-98142321	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98128000-98139200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:98132800-98135400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:98134600-98136400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:98134800-98135400	Enhancers	Hela-S3	cervix
5	chr9:98134800-98135600	Enhancers	Pancreas	Pancrea
6	chr9:98134800-98135800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:98134800-98135800	Enhancers	Fetal Muscle Trunk	muscle
8	chr9:98134800-98135800	Enhancers	NHEK	skin
9	chr9:98134800-98136200	Enhancers	HSMMtube	muscle
10	chr9:98135000-98135800	Enhancers	HMEC	breast
11	chr9:98135000-98136000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:98135000-98136800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr9:98135200-98135600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:98135200-98135800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:98135200-98136000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:98135200-98136200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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