Variant report

Variant	rs536056204
Chromosome Location	chr16:48480550-48480551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1061708	chr16:48304343-48482594	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv542917	chr16:48304343-48482594	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1056931	chr16:48417388-48482594	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv542918	chr16:48417388-48482594	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv1800739	chr16:48418505-48560315	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv428658	chr16:48438656-48587750	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	esv1008270	chr16:48474586-48482323	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
10	nsv519663	chr16:48479935-48489387	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48466400-48487200	Weak transcription	Right Ventricle	heart
2	chr16:48475800-48480600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr16:48478400-48480800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:48479200-48481400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:48479400-48480600	Enhancers	NH-A	brain
6	chr16:48479400-48481000	Enhancers	Hela-S3	cervix
7	chr16:48479400-48481200	Weak transcription	A549	lung
8	chr16:48479400-48484200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:48479400-48484400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:48479400-48484400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr16:48479400-48484400	Weak transcription	Osteobl	bone
12	chr16:48479400-48484600	Weak transcription	HMEC	breast
13	chr16:48479400-48484600	Weak transcription	NHLF	lung
14	chr16:48479600-48486800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr16:48479800-48480600	Bivalent Enhancer	HepG2	liver
16	chr16:48480400-48480600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr16:48480400-48480600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr16:48480400-48480600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr16:48480400-48480600	Enhancers	Brain Hippocampus Middle	brain
20	chr16:48480400-48480600	Enhancers	Fetal Kidney	kidney
21	chr16:48480400-48480600	Enhancers	Fetal Muscle Leg	muscle
22	chr16:48480400-48480800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:48480400-48480800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:48480400-48480800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr16:48480400-48481000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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