Variant report

Variant	rs536061318
Chromosome Location	chr12:9848714-9848715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLRF1-2	chr12:9847356-9852151	NR_036693

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv975446	chr12:9847906-9852218	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9802400-9849800	Weak transcription	Pancreas	Pancrea
2	chr12:9818000-9849800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:9826400-9849000	Weak transcription	Psoas Muscle	Psoas
4	chr12:9826600-9852400	Weak transcription	Colon Smooth Muscle	Colon
5	chr12:9826800-9849400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:9826800-9849800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr12:9826800-9854400	Weak transcription	Esophagus	oesophagus
8	chr12:9827000-9853200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:9827200-9851000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:9827200-9851600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:9827200-9852400	Weak transcription	Osteobl	bone
12	chr12:9827400-9849000	Weak transcription	A549	lung
13	chr12:9833000-9849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:9835400-9849200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:9837800-9849400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:9838200-9849800	Strong transcription	Fetal Thymus	thymus
17	chr12:9838400-9849600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:9838800-9849200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr12:9838800-9854400	Weak transcription	Spleen	Spleen
20	chr12:9839000-9854400	Weak transcription	Lung	lung
21	chr12:9839400-9848800	Weak transcription	Brain Substantia Nigra	brain
22	chr12:9839400-9854600	Weak transcription	Small Intestine	intestine
23	chr12:9840000-9849000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr12:9840600-9864600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr12:9841000-9849600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr12:9841800-9854800	Weak transcription	Right Ventricle	heart
27	chr12:9841800-9863200	Weak transcription	HSMMtube	muscle
28	chr12:9842200-9850800	Weak transcription	Fetal Brain Male	brain
29	chr12:9842800-9852200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr12:9843000-9849000	Weak transcription	Dnd41	blood
31	chr12:9843000-9849400	Weak transcription	NHDF-Ad	bronchial
32	chr12:9843600-9849200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr12:9844000-9852400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr12:9844200-9860600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr12:9844600-9849200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:9845200-9849200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr12:9845600-9849600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
38	chr12:9845800-9849200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr12:9845800-9849200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr12:9846000-9852400	Weak transcription	NHLF	lung
41	chr12:9846800-9849400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr12:9847000-9848800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:9847000-9848800	Strong transcription	Fetal Intestine Large	intestine
44	chr12:9847200-9848800	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr12:9847200-9848800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
46	chr12:9847200-9849000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr12:9847400-9849400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr12:9847600-9849600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
49	chr12:9847600-9850400	Weak transcription	Fetal Heart	heart
50	chr12:9847600-9860000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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