Variant report

Variant	rs536139998
Chromosome Location	chr11:119473173-119473174
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv983068	chr11:119472667-119476571	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119468600-119473400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119469400-119473800	Weak transcription	Pancreas	Pancrea
3	chr11:119471200-119476000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:119471800-119485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:119472200-119477400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:119472400-119474000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:119472400-119475400	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:119472600-119475600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:119472600-119476600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:119473000-119475000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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