Variant report

Variant	rs536164773
Chromosome Location	chr10:116584802-116584803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv3437629	chr10:116584595-116585109	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116582200-116585200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:116582600-116585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:116582600-116589000	Weak transcription	Gastric	stomach
4	chr10:116582600-116589400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:116582600-116596800	Weak transcription	Lung	lung
6	chr10:116582600-116597000	Weak transcription	Spleen	Spleen
7	chr10:116582800-116585800	Weak transcription	Left Ventricle	heart
8	chr10:116582800-116589000	Weak transcription	Right Ventricle	heart
9	chr10:116582800-116593000	Weak transcription	Colonic Mucosa	Colon
10	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
11	chr10:116583000-116585400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:116583000-116586000	Enhancers	Fetal Heart	heart
13	chr10:116583000-116586200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:116583000-116586800	Enhancers	Placenta	Placenta
15	chr10:116583000-116589400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:116583000-116593200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:116583000-116594800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:116583000-116596200	Weak transcription	Brain Substantia Nigra	brain
19	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:116583200-116585000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:116583200-116585000	Enhancers	Colon Smooth Muscle	Colon
22	chr10:116583200-116586000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:116583200-116586200	Enhancers	Liver	Liver
24	chr10:116583200-116586400	Enhancers	Hela-S3	cervix
25	chr10:116583200-116586600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:116583200-116587000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr10:116583200-116587400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:116583200-116587400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:116583200-116587600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:116583200-116587800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:116583200-116587800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:116583200-116588000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:116583200-116590600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:116583200-116591000	Weak transcription	Fetal Intestine Large	intestine
35	chr10:116583200-116592800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:116583200-116594000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:116583200-116616800	Weak transcription	K562	blood
38	chr10:116583400-116585000	Enhancers	Fetal Intestine Small	intestine
39	chr10:116583400-116585400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:116583400-116585400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr10:116583400-116585600	Flanking Active TSS	Osteobl	bone
42	chr10:116583400-116585800	Enhancers	Brain Germinal Matrix	brain
43	chr10:116583400-116586000	Enhancers	HepG2	liver
44	chr10:116583400-116592400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:116583600-116585200	Enhancers	HSMMtube	muscle
46	chr10:116583600-116585400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:116583600-116585600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr10:116583600-116585800	Flanking Active TSS	NHEK	skin
49	chr10:116583600-116586000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:116583600-116586200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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