Variant report

Variant	rs536172413
Chromosome Location	chr13:38049006-38049007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv21202	chr13:38045699-38049225	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
9	esv3509075	chr13:38046252-38051150	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
10	nsv512310	chr13:38047833-38049592	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
11	esv3509052	chr13:38048295-38049434	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
12	nsv511513	chr13:38048308-38050826	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
13	esv3509041	chr13:38048349-38049404	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
14	esv3509064	chr13:38048358-38049274	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
15	esv3509086	chr13:38048364-38049274	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
16	esv3509030	chr13:38048364-38049357	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
17	esv3442437	chr13:38048393-38049317	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
18	esv13756	chr13:38048444-38049331	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38046000-38049200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:38048600-38049800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:38048800-38049800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:38048800-38051200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:38049000-38049400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:38049000-38049800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:38049000-38049800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:38049000-38049800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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