Variant report

Variant	rs536199858
Chromosome Location	chr5:178082705-178082706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1023697	chr5:178070594-178126328	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537972	chr5:178070594-178126328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3381395	chr5:178082246-178086544	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178082000-178083000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:178082200-178083000	Enhancers	Fetal Heart	heart
3	chr5:178082400-178082800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:178082400-178082800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:178082400-178082800	Enhancers	NHEK	skin
6	chr5:178082400-178083000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:178082400-178083000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr5:178082400-178083000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:178082400-178083000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:178082400-178083000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:178082400-178083000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:178082400-178083000	Enhancers	NHDF-Ad	bronchial
13	chr5:178082600-178082800	Enhancers	Fetal Stomach	stomach
14	chr5:178082600-178083000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:178082600-178083000	Flanking Active TSS	Rectal Smooth Muscle	rectum
16	chr5:178082600-178083000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
17	chr5:178082600-178083000	Flanking Active TSS	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links