Variant report

Variant	rs536265249
Chromosome Location	chr1:151956790-151956791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151955991..151958464-chr1:151959511..151962330,2	K562	blood:
2	chr1:151951145..151953064-chr1:151955721..151958103,2	K562	blood:
3	chr1:151906693..151908513-chr1:151954832..151956959,2	K562	blood:
4	chr1:151951212..151953064-chr1:151955112..151957221,2	K562	blood:
5	chr1:151861526..151864344-chr1:151954395..151956791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159445	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases
5	nsv2855	chr1:151936470-151966381	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	85 gene(s)	inside rSNPs	diseases
6	nsv947323	chr1:151956610-151960426	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151941600-151961200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:151946600-151957000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:151946600-151958800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:151949200-151963200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:151949800-151957200	Weak transcription	Stomach Mucosa	stomach
6	chr1:151951000-151961800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:151951600-151960800	Weak transcription	Fetal Thymus	thymus
8	chr1:151951800-151961800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:151952400-151959600	Genic enhancers	NHDF-Ad	bronchial
10	chr1:151952400-151960800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:151952600-151957800	Genic enhancers	Fetal Intestine Small	intestine
12	chr1:151952600-151960400	Genic enhancers	NHEK	skin
13	chr1:151952800-151957200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr1:151952800-151957400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:151952800-151959400	Strong transcription	Primary T cells from cord blood	blood
16	chr1:151953000-151957200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr1:151953000-151958400	Strong transcription	Lung	lung
18	chr1:151953000-151958400	Strong transcription	Spleen	Spleen
19	chr1:151953000-151958600	Genic enhancers	Rectal Mucosa Donor 31	rectum
20	chr1:151953000-151958800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr1:151953200-151957000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:151953200-151958800	Strong transcription	Fetal Lung	lung
23	chr1:151953400-151956800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:151953400-151958600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:151953400-151958600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:151953400-151958600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:151953400-151958800	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr1:151953400-151959200	Genic enhancers	Placenta Amnion	Placenta Amnion
29	chr1:151953400-151959200	Strong transcription	Dnd41	blood
30	chr1:151953400-151959400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:151953400-151959400	Strong transcription	Psoas Muscle	Psoas
32	chr1:151953400-151959400	Genic enhancers	HSMM	muscle
33	chr1:151953600-151957600	Strong transcription	Gastric	stomach
34	chr1:151953600-151958000	Genic enhancers	Hela-S3	cervix
35	chr1:151953600-151959000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:151953600-151959400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:151953600-151959400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:151953600-151959400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:151953600-151959400	Strong transcription	Liver	Liver
40	chr1:151953800-151957600	Weak transcription	Fetal Kidney	kidney
41	chr1:151953800-151958200	Strong transcription	Rectal Smooth Muscle	rectum
42	chr1:151953800-151958400	Strong transcription	Right Ventricle	heart
43	chr1:151953800-151958600	Strong transcription	Colonic Mucosa	Colon
44	chr1:151953800-151959400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:151954000-151956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr1:151954000-151957000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr1:151954000-151957200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr1:151954000-151958200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:151954000-151958800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:151954000-151958800	Strong transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links