Variant report

Variant	rs536281204
Chromosome Location	chr9:108472477-108472478
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108455042..108457950-chr9:108472079..108474194,2	K562	blood:
2	chr9:108459267..108461864-chr9:108470911..108472758,2	K562	blood:

Variant related genes	Relation type
ENSG00000095209	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv968742	chr9:108471448-108472808	Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108457800-108472800	Weak transcription	Spleen	Spleen
2	chr9:108457800-108476200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:108457800-108492200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:108458000-108473000	Weak transcription	Left Ventricle	heart
5	chr9:108458000-108475200	Weak transcription	Fetal Thymus	thymus
6	chr9:108458000-108475600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:108458000-108475600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:108458000-108475600	Weak transcription	Thymus	Thymus
9	chr9:108458000-108476000	Weak transcription	Ovary	ovary
10	chr9:108458000-108479200	Weak transcription	Fetal Brain Male	brain
11	chr9:108458000-108497800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:108458200-108476400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:108458200-108478800	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:108458200-108480800	Weak transcription	Brain Angular Gyrus	brain
15	chr9:108458200-108491400	Weak transcription	HSMMtube	muscle
16	chr9:108458200-108491600	Weak transcription	Brain Anterior Caudate	brain
17	chr9:108458200-108495400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:108458200-108497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:108458600-108472600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:108459000-108476000	Weak transcription	Fetal Brain Female	brain
21	chr9:108459200-108489400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:108462600-108472600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:108463200-108478400	Weak transcription	Hela-S3	cervix
24	chr9:108463200-108496800	Weak transcription	HepG2	liver
25	chr9:108463400-108487600	Weak transcription	Primary B cells from cord blood	blood
26	chr9:108464000-108474800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:108464200-108474800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr9:108464400-108476000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:108465000-108496600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:108465600-108476200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:108466200-108476200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr9:108466800-108478400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr9:108467200-108473400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr9:108467800-108472800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:108467800-108474200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:108468400-108475000	Weak transcription	Right Ventricle	heart
37	chr9:108468800-108475400	Weak transcription	Fetal Stomach	stomach
38	chr9:108469000-108476200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr9:108469000-108485000	Weak transcription	Small Intestine	intestine
40	chr9:108469200-108472800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr9:108469200-108475000	Weak transcription	Fetal Muscle Leg	muscle
42	chr9:108469200-108476000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr9:108469200-108478000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr9:108469400-108473000	Weak transcription	Fetal Intestine Small	intestine
45	chr9:108469800-108476400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:108470600-108476000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:108470600-108497000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr9:108470800-108472600	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr9:108470800-108474600	Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr9:108470800-108487200	Weak transcription	Liver	Liver

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