Variant report

Variant	rs536342352
Chromosome Location	chr2:171729747-171729748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171226307..171227085-chr2:171729418..171730140,3	MCF-7	breast:
2	chr2:171092223..171093153-chr2:171729363..171730378,4	K562	blood:
3	chr2:171701425..171702174-chr2:171729449..171729961,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv526140	chr2:171729643-171732497	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171699000-171730000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:171729000-171730200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:171729200-171729800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:171729200-171729800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:171729200-171730000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:171729200-171730200	Enhancers	HUVEC	blood vessel
7	chr2:171729200-171730600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:171729400-171729800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:171729400-171729800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:171729400-171729800	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr2:171729400-171729800	Enhancers	Brain Substantia Nigra	brain
12	chr2:171729400-171729800	Enhancers	HSMMtube	muscle
13	chr2:171729400-171730000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:171729400-171730000	Active TSS	Brain Cingulate Gyrus	brain
15	chr2:171729400-171730200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:171729400-171730200	Enhancers	Primary hematopoietic stem cells	blood
17	chr2:171729400-171730200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr2:171729400-171730200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:171729400-171730200	Enhancers	Fetal Heart	heart
20	chr2:171729400-171730200	Flanking Active TSS	Dnd41	blood
21	chr2:171729400-171730400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:171729400-171730400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr2:171729600-171729800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr2:171729600-171729800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
25	chr2:171729600-171729800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr2:171729600-171729800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:171729600-171729800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:171729600-171729800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr2:171729600-171729800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:171729600-171729800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:171729600-171729800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:171729600-171729800	Flanking Active TSS	Brain Germinal Matrix	brain
33	chr2:171729600-171729800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr2:171729600-171729800	Flanking Active TSS	Fetal Intestine Large	intestine
35	chr2:171729600-171729800	Active TSS	Fetal Muscle Trunk	muscle
36	chr2:171729600-171729800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr2:171729600-171729800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr2:171729600-171729800	Flanking Active TSS	A549	lung
39	chr2:171729600-171729800	Enhancers	HMEC	breast
40	chr2:171729600-171729800	Active TSS	Monocytes-CD14+_RO01746	blood
41	chr2:171729600-171729800	Active TSS	NH-A	brain
42	chr2:171729600-171729800	Flanking Active TSS	NHEK	skin
43	chr2:171729600-171729800	Flanking Active TSS	Osteobl	bone
44	chr2:171729600-171730000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:171729600-171730000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:171729600-171730000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr2:171729600-171730000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:171729600-171730000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:171729600-171730000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:171729600-171730000	Flanking Active TSS	Primary T cells from cord blood	blood

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