Variant report

Variant	rs536349018
Chromosome Location	chr11:77524002-77524003
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77520152..77525474-chr11:77528362..77532820,9	MCF-7	breast:
2	chr11:77521920..77524304-chr11:77525173..77528253,3	MCF-7	breast:
3	chr11:77523579..77527566-chr11:77528400..77532529,6	K562	blood:

Variant related genes	Relation type
ENSG00000087884	Chromatin interaction
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv975952	chr11:77523566-77526029	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
2	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:77475400-77529000	Weak transcription	NHLF	lung
4	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
6	chr11:77495800-77528200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:77499000-77525600	Weak transcription	HMEC	breast
9	chr11:77501200-77525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:77501400-77526800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:77503400-77525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:77503600-77525000	Weak transcription	Ovary	ovary
13	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
14	chr11:77503800-77525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:77504000-77524400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:77504800-77524600	Weak transcription	Fetal Intestine Large	intestine
17	chr11:77504800-77525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:77505000-77528400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:77505200-77524200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:77505400-77525800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:77506800-77528200	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:77508000-77527800	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:77509400-77528800	Weak transcription	Brain Germinal Matrix	brain
24	chr11:77509800-77530000	Weak transcription	NH-A	brain
25	chr11:77510000-77524600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:77511400-77526000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:77512000-77524800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:77512000-77525800	Weak transcription	NHDF-Ad	bronchial
29	chr11:77512000-77529600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:77512200-77529200	Weak transcription	Fetal Brain Female	brain
31	chr11:77512400-77525400	Weak transcription	Psoas Muscle	Psoas
32	chr11:77512400-77530200	Weak transcription	Esophagus	oesophagus
33	chr11:77512400-77530600	Weak transcription	Lung	lung
34	chr11:77512600-77527000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:77512600-77530600	Weak transcription	Spleen	Spleen
36	chr11:77512800-77529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:77512800-77530400	Weak transcription	Gastric	stomach
38	chr11:77513200-77529400	Weak transcription	Small Intestine	intestine
39	chr11:77514400-77526000	Weak transcription	NHEK	skin
40	chr11:77515400-77524600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:77515400-77530000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:77515600-77524400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:77516600-77530200	Weak transcription	HSMM	muscle
44	chr11:77517200-77529200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:77518400-77527000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:77518400-77528400	Weak transcription	Osteobl	bone
47	chr11:77518400-77529200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:77518600-77525400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:77518600-77525800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:77518600-77530000	Weak transcription	Brain Substantia Nigra	brain

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