Variant report

Variant	rs536385829
Chromosome Location	chr1:155716343-155716344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155713796..155716545-chr1:155826802..155829458,2	K562	blood:

Variant related genes	Relation type
ENSG00000132718	Chromatin interaction
ENSG00000116580	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv3065	chr1:155682768-155727524	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv946422	chr1:155716220-155722236	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155714000-155716800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:155714600-155716600	Active TSS	HMEC	breast
3	chr1:155714600-155716800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:155714800-155716600	Active TSS	GM12878-XiMat	blood
5	chr1:155715000-155716800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:155715200-155716600	Active TSS	Dnd41	blood
7	chr1:155715200-155716800	Active TSS	NHEK	skin
8	chr1:155715400-155717200	Weak transcription	Lung	lung
9	chr1:155715400-155720800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:155715400-155720800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:155715400-155721200	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:155715400-155723000	Weak transcription	Aorta	Aorta
13	chr1:155715400-155725600	Weak transcription	Fetal Brain Male	brain
14	chr1:155715400-155726200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:155715400-155730000	Weak transcription	Stomach Mucosa	stomach
16	chr1:155715400-155739200	Weak transcription	Fetal Heart	heart
17	chr1:155715400-155789200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:155715600-155716600	Weak transcription	Fetal Intestine Small	intestine
19	chr1:155715600-155717200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:155715600-155717400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:155715600-155717400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:155715600-155717400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:155715600-155717400	Weak transcription	Primary T cells from cord blood	blood
24	chr1:155715600-155717400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:155715600-155717400	Weak transcription	Adipose Nuclei	Adipose
26	chr1:155715600-155717400	Weak transcription	Brain Anterior Caudate	brain
27	chr1:155715600-155717400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr1:155715600-155717400	Weak transcription	Ovary	ovary
29	chr1:155715600-155717400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr1:155715600-155717600	Weak transcription	Liver	Liver
31	chr1:155715600-155717600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:155715600-155717600	Weak transcription	Spleen	Spleen
33	chr1:155715600-155717800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr1:155715600-155717800	Weak transcription	Brain Substantia Nigra	brain
35	chr1:155715600-155717800	Weak transcription	Thymus	Thymus
36	chr1:155715600-155718000	Weak transcription	K562	blood
37	chr1:155715600-155718400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr1:155715600-155718400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:155715600-155718400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:155715600-155720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr1:155715600-155720600	Weak transcription	Colonic Mucosa	Colon
42	chr1:155715600-155720600	Weak transcription	Fetal Lung	lung
43	chr1:155715600-155720800	Weak transcription	Primary B cells from cord blood	blood
44	chr1:155715600-155720800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr1:155715600-155720800	Weak transcription	HepG2	liver
46	chr1:155715600-155722800	Weak transcription	Fetal Kidney	kidney
47	chr1:155715600-155722800	Weak transcription	Gastric	stomach
48	chr1:155715600-155725000	Weak transcription	Small Intestine	intestine
49	chr1:155715600-155725200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr1:155715600-155725200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links