Variant report

Variant	rs536409928
Chromosome Location	chr11:104904788-104904789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:104904498-104904818	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
CASP1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1041081	chr11:104797775-104912458	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv468863	chr11:104875261-104918517	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	nsv556219	chr11:104875261-104918517	Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
11	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv975223	chr11:104904476-104905607	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104894200-104905600	Weak transcription	Esophagus	oesophagus
2	chr11:104897800-104905600	Weak transcription	Ovary	ovary
3	chr11:104899200-104905400	Weak transcription	Aorta	Aorta
4	chr11:104899400-104905400	Weak transcription	Fetal Brain Male	brain
5	chr11:104899400-104905600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:104899600-104905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:104899600-104909200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:104899800-104905000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:104901600-104905000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:104902000-104905400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:104902200-104906800	Weak transcription	Gastric	stomach
12	chr11:104903000-104906000	Active TSS	Primary monocytes fromperipheralblood	blood
13	chr11:104903000-104906000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr11:104903200-104904800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr11:104903200-104905000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr11:104903200-104906200	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr11:104903200-104906200	Flanking Active TSS	Dnd41	blood
18	chr11:104903200-104906400	Active TSS	Rectal Smooth Muscle	rectum
19	chr11:104903400-104905200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr11:104903400-104905200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr11:104903400-104906000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:104903400-104906000	Active TSS	GM12878-XiMat	blood
23	chr11:104903400-104906200	Active TSS	Primary T cells fromperipheralblood	blood
24	chr11:104903400-104906400	Active TSS	Right Atrium	heart
25	chr11:104903600-104905200	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr11:104903600-104906200	Active TSS	Brain Hippocampus Middle	brain
27	chr11:104903800-104905200	Enhancers	Stomach Mucosa	stomach
28	chr11:104904000-104905200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr11:104904000-104905200	Flanking Active TSS	NHEK	skin
30	chr11:104904000-104905800	Active TSS	Colonic Mucosa	Colon
31	chr11:104904000-104906000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:104904000-104906200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:104904200-104904800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:104904200-104905000	Enhancers	Fetal Thymus	thymus
35	chr11:104904200-104905200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:104904200-104905400	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr11:104904200-104905400	Flanking Active TSS	HMEC	breast
38	chr11:104904200-104906000	Active TSS	Brain Anterior Caudate	brain
39	chr11:104904200-104906000	Active TSS	Colon Smooth Muscle	Colon
40	chr11:104904200-104906200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:104904200-104906200	Active TSS	Brain Cingulate Gyrus	brain
42	chr11:104904200-104906200	Active TSS	Stomach Smooth Muscle	stomach
43	chr11:104904400-104904800	Enhancers	Small Intestine	intestine
44	chr11:104904400-104904800	Weak transcription	NHDF-Ad	bronchial
45	chr11:104904400-104905000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:104904400-104905000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:104904400-104905000	Active TSS	Hela-S3	cervix
48	chr11:104904400-104905200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:104904400-104905400	Active TSS	Fetal Lung	lung
50	chr11:104904400-104905400	Weak transcription	Right Ventricle	heart

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