Variant report

Variant	rs536476908
Chromosome Location	chr10:112694035-112694036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112691219..112695362-chr10:112695848..112700041,5	MCF-7	breast:
2	chr10:112693592..112695425-chr10:112736222..112738778,2	MCF-7	breast:
3	chr10:112691670..112694592-chr10:112699465..112702013,2	K562	blood:

Variant related genes	Relation type
ENSG00000234118	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv518667	chr10:112692802-112697241	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv948185	chr10:112693659-112697045	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112680600-112696600	Weak transcription	Lung	lung
2	chr10:112680600-112706800	Weak transcription	Esophagus	oesophagus
3	chr10:112680800-112704600	Weak transcription	Aorta	Aorta
4	chr10:112681000-112696400	Weak transcription	Fetal Stomach	stomach
5	chr10:112681000-112696600	Weak transcription	Thymus	Thymus
6	chr10:112681000-112704600	Weak transcription	Right Ventricle	heart
7	chr10:112682000-112700600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:112682000-112702000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:112682000-112702200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:112682000-112704600	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:112682000-112708400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:112683000-112700800	Weak transcription	Dnd41	blood
14	chr10:112684200-112696400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:112684200-112700800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:112684200-112701000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:112684400-112696600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:112684400-112712600	Weak transcription	HepG2	liver
19	chr10:112684800-112696400	Weak transcription	Spleen	Spleen
20	chr10:112685200-112719200	Weak transcription	A549	lung
21	chr10:112685600-112695800	Weak transcription	Fetal Intestine Small	intestine
22	chr10:112687600-112697800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:112688200-112696800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:112688600-112696000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:112688600-112696400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:112688600-112696600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:112688600-112697000	Weak transcription	Fetal Brain Female	brain
28	chr10:112689200-112697200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:112689400-112704600	Weak transcription	Left Ventricle	heart
30	chr10:112689600-112701600	Weak transcription	Primary B cells from cord blood	blood
31	chr10:112689600-112714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:112689800-112702200	Weak transcription	Primary T cells from cord blood	blood
33	chr10:112690200-112707800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:112690800-112702200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:112691200-112696400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:112691200-112700400	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr10:112691600-112696600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:112691800-112703600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:112692000-112696400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:112692000-112700800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:112692000-112703200	Weak transcription	Liver	Liver
42	chr10:112692000-112722000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:112692200-112694800	Weak transcription	GM12878-XiMat	blood
44	chr10:112692400-112696200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:112692400-112696800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr10:112692400-112700400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:112692400-112701200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:112692400-112703600	Weak transcription	NHLF	lung
49	chr10:112692400-112704000	Weak transcription	Adipose Nuclei	Adipose
50	chr10:112692400-112704600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links