Variant report

Variant	rs536532694
Chromosome Location	chr7:65338564-65338565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:64498559..64499288-chr7:65338067..65339051,2	NB4	blood:
2	chr7:65214366..65217502-chr7:65337041..65339664,3	MCF-7	breast:
3	chr11:62609016..62609720-chr7:65338341..65338852,2	Hela-S3	cervix:
4	chr7:65337864..65339398-chr7:65445758..65448693,2	K562	blood:
5	chr7:64498619..64500351-chr7:65337220..65338727,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction
ENSG00000228409	Chromatin interaction
ENSG00000234585	Chromatin interaction
ENSG00000239985	Chromatin interaction
ENSG00000169919	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429767	chr7:64473713-65415647	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3339156	chr7:64510176-65349050	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv2759534	chr7:64551274-65373851	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv427788	chr7:64551274-65390424	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv2764020	chr7:64594065-65351820	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv1029942	chr7:64679680-65371565	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv538903	chr7:64679680-65371565	Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv1019667	chr7:64679680-65380603	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	esv2757227	chr7:64694241-65373851	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	nsv1025207	chr7:65092426-65339879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1033400	chr7:65092426-65339879	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv1020622	chr7:65161364-65339879	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv1029800	chr7:65309327-65367692	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	esv3427026	chr7:65336942-65339890	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	esv3414148	chr7:65337017-65339740	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65337400-65339200	Active TSS	Hela-S3	cervix
2	chr7:65337400-65339600	Active TSS	A549	lung
3	chr7:65337600-65339000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
4	chr7:65337600-65339000	Active TSS	Fetal Brain Female	brain
5	chr7:65337600-65339000	Active TSS	HepG2	liver
6	chr7:65337600-65339200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:65337600-65339200	Active TSS	K562	blood
8	chr7:65337600-65339400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:65337600-65339400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:65337600-65339400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr7:65337600-65339400	Active TSS	Fetal Thymus	thymus
12	chr7:65337600-65339400	Active TSS	Ovary	ovary
13	chr7:65337600-65339400	Active TSS	Thymus	Thymus
14	chr7:65337600-65339600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr7:65337600-65339600	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr7:65337600-65339600	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr7:65337600-65339600	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr7:65337600-65339600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:65337600-65339600	Active TSS	Brain Angular Gyrus	brain
20	chr7:65337600-65339600	Active TSS	Brain Anterior Caudate	brain
21	chr7:65337600-65339600	Active TSS	Brain Cingulate Gyrus	brain
22	chr7:65337600-65339600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr7:65337600-65339600	Active TSS	HMEC	breast
24	chr7:65337600-65340000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr7:65337600-65340000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:65337800-65338800	Active TSS	Adipose Nuclei	Adipose
27	chr7:65337800-65339200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:65337800-65339200	Active TSS	Brain Substantia Nigra	brain
29	chr7:65337800-65339400	Active TSS	H1 Cell Line	embryonic stem cell
30	chr7:65337800-65339600	Active TSS	Brain Germinal Matrix	brain
31	chr7:65338000-65338800	Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr7:65338000-65339000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr7:65338000-65339000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:65338000-65339200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:65338000-65339200	Active TSS	Dnd41	blood
36	chr7:65338000-65339400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:65338000-65339400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:65338000-65339400	Active TSS	Psoas Muscle	Psoas
39	chr7:65338000-65339600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:65338200-65338800	Active TSS	Primary monocytes fromperipheralblood	blood
41	chr7:65338200-65338800	Active TSS	Primary B cells from peripheral blood	blood
42	chr7:65338200-65338800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:65338200-65338800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr7:65338200-65339000	Active TSS	Primary T cells fromperipheralblood	blood
45	chr7:65338200-65339000	Active TSS	Fetal Muscle Trunk	muscle
46	chr7:65338200-65339000	Active TSS	Fetal Muscle Leg	muscle
47	chr7:65338200-65339000	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr7:65338200-65339000	Active TSS	Small Intestine	intestine
49	chr7:65338200-65339000	Active TSS	Spleen	Spleen
50	chr7:65338200-65339000	Active TSS	HUVEC	blood vessel

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