Variant report

Variant	rs536540092
Chromosome Location	chr6:126660771-126660772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:126660726-126661738	SK-N-MC	brain:	n/a	n/a
2	CREB1	chr6:126660700-126661875	K562	blood:	n/a	n/a
3	TEAD4	chr6:126660661-126661600	HepG2	liver:	n/a	n/a
4	POLR2A	chr6:126660650-126661816	H1-hESC	embryonic stem cell:	n/a	n/a
5	MXI1	chr6:126660628-126662271	SK-N-SH	brain:	n/a	n/a
6	CREB1	chr6:126660729-126661919	HepG2	liver:	n/a	n/a
7	E2F4	chr6:126660487-126662526	MCF10A-Er-Src	breast:	n/a	chr6:126661147-126661156 chr6:126661149-126661158 chr6:126661213-126661222

Variant related genes	Relation type
CENPW	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3379370	chr6:126660674-126663387	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126657600-126660800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:126658600-126660800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:126658600-126660800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:126658600-126660800	Weak transcription	Fetal Lung	lung
5	chr6:126658800-126660800	Enhancers	Primary T cells from cord blood	blood
6	chr6:126658800-126660800	Weak transcription	Placenta	Placenta
7	chr6:126659000-126660800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:126659000-126660800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:126659000-126660800	Weak transcription	Adipose Nuclei	Adipose
10	chr6:126659000-126660800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:126659000-126660800	Weak transcription	Hela-S3	cervix
12	chr6:126659000-126660800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:126659000-126660800	Weak transcription	NHDF-Ad	bronchial
14	chr6:126659000-126661000	Weak transcription	Psoas Muscle	Psoas
15	chr6:126659200-126660800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:126659200-126660800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:126659400-126660800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:126660200-126661000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:126660600-126660800	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr6:126660600-126660800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:126660600-126660800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:126660600-126660800	Enhancers	Dnd41	blood
23	chr6:126660600-126661400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:126660600-126661400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:126660600-126662400	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:126660600-126663800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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