Variant report

Variant	rs536554600
Chromosome Location	chr11:34912241-34912242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv8807	chr11:34912167-34930289	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
2	chr11:34891200-34919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:34892600-34913000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:34893000-34921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:34895000-34921200	Weak transcription	Right Ventricle	heart
6	chr11:34897000-34913000	Weak transcription	Lung	lung
7	chr11:34897000-34919200	Weak transcription	Fetal Stomach	stomach
8	chr11:34897600-34919200	Weak transcription	Fetal Heart	heart
9	chr11:34898200-34926800	Weak transcription	HSMMtube	muscle
10	chr11:34898400-34912800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:34899000-34917400	Weak transcription	HSMM	muscle
12	chr11:34900000-34918200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:34900200-34917200	Weak transcription	HUVEC	blood vessel
14	chr11:34900200-34921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:34901400-34917400	Weak transcription	Fetal Kidney	kidney
16	chr11:34901400-34920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:34901600-34918200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:34901800-34916800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:34901800-34917000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:34902000-34921600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:34902200-34915600	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:34902400-34912800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:34903600-34919200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:34903800-34914200	Weak transcription	Fetal Brain Male	brain
25	chr11:34904000-34918600	Weak transcription	NHDF-Ad	bronchial
26	chr11:34904800-34915600	Weak transcription	GM12878-XiMat	blood
27	chr11:34905000-34912800	Weak transcription	Primary B cells from cord blood	blood
28	chr11:34905000-34917800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:34905200-34912600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:34905200-34912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:34905200-34915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:34905200-34915400	Weak transcription	Fetal Brain Female	brain
33	chr11:34905200-34917800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr11:34906200-34916200	Weak transcription	Primary T cells from cord blood	blood
35	chr11:34907200-34918200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:34907400-34917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:34907800-34918000	Weak transcription	Fetal Intestine Large	intestine
38	chr11:34908400-34921200	Weak transcription	Aorta	Aorta
39	chr11:34908600-34917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:34908800-34915600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:34908800-34921000	Weak transcription	Ovary	ovary
42	chr11:34909000-34915000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:34909200-34912800	Weak transcription	HepG2	liver
44	chr11:34909200-34919200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:34909400-34918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:34909600-34918200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:34909800-34921600	Weak transcription	Stomach Mucosa	stomach
48	chr11:34910000-34915800	Weak transcription	Fetal Muscle Leg	muscle
49	chr11:34910000-34918200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:34910200-34913200	Weak transcription	Primary monocytes fromperipheralblood	blood

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