Variant report

Variant	rs536559123
Chromosome Location	chr11:85870854-85870855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85778281..85780069-chr11:85870472..85872120,2	MCF-7	breast:
2	chr11:85861483..85864657-chr11:85868635..85871991,4	K562	blood:
3	chr11:85854757..85856923-chr11:85869692..85871194,2	K562	blood:
4	chr11:85868869..85870962-chr11:85877166..85880690,3	MCF-7	breast:
5	chr11:85845930..85847808-chr11:85868487..85870881,2	K562	blood:

Variant related genes	Relation type
ENSG00000200877	Chromatin interaction
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85863400-85872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:85863400-85873000	Weak transcription	Lung	lung
3	chr11:85863600-85871200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:85863800-85871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:85864200-85871600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:85864200-85871600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:85864200-85871600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:85864200-85872000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:85864400-85871600	Weak transcription	Brain Anterior Caudate	brain
10	chr11:85865200-85871000	Weak transcription	Small Intestine	intestine
11	chr11:85865200-85871200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:85865200-85872400	Weak transcription	Liver	Liver
13	chr11:85865400-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:85866400-85874200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:85866600-85873000	Weak transcription	Gastric	stomach
16	chr11:85867400-85875800	Enhancers	Placenta	Placenta
17	chr11:85867600-85871000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:85867800-85871800	Weak transcription	Adipose Nuclei	Adipose
19	chr11:85867800-85872800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:85867800-85873000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:85867800-85873000	Weak transcription	Left Ventricle	heart
22	chr11:85867800-85873000	Weak transcription	Right Ventricle	heart
23	chr11:85868000-85871000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:85868000-85871600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:85868000-85876200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:85868600-85874600	Enhancers	Fetal Stomach	stomach
27	chr11:85868800-85876600	Enhancers	Hela-S3	cervix
28	chr11:85869000-85874400	Enhancers	NHEK	skin
29	chr11:85869800-85871000	Weak transcription	HepG2	liver
30	chr11:85869800-85871600	Enhancers	Fetal Thymus	thymus
31	chr11:85869800-85873000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:85870000-85871000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:85870000-85872800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:85870200-85871000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:85870200-85871000	Enhancers	Brain Substantia Nigra	brain
36	chr11:85870200-85872000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:85870200-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:85870200-85875800	Enhancers	Brain Hippocampus Middle	brain
39	chr11:85870400-85871200	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:85870400-85872600	Enhancers	Primary B cells from peripheral blood	blood
41	chr11:85870400-85873600	Enhancers	Placenta Amnion	Placenta Amnion
42	chr11:85870400-85874200	Enhancers	K562	blood
43	chr11:85870400-85875200	Enhancers	Fetal Muscle Leg	muscle
44	chr11:85870600-85871600	Enhancers	Fetal Muscle Trunk	muscle
45	chr11:85870600-85871800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:85870600-85872200	Enhancers	Stomach Smooth Muscle	stomach
47	chr11:85870600-85873600	Enhancers	GM12878-XiMat	blood
48	chr11:85870600-85873800	Enhancers	Fetal Lung	lung
49	chr11:85870600-85874200	Enhancers	Fetal Intestine Large	intestine
50	chr11:85870600-85874600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links