Variant report

Variant	rs536672879
Chromosome Location	chr16:59788742-59788743
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:59788728-59788778	ECC-1	luminal epithelium:	n/a
2	chr16:59788728-59788778	BJ	skin:	n/a
3	chr16:59788728-59788778	SKMC	muscle:	n/a
4	chr16:59788728-59788778	GM12878	blood:	n/a
5	chr16:59788728-59788778	HEEpiC	esophagus:	n/a
6	chr16:59788728-59788778	HMEC	breast:	n/a
7	chr16:59788728-59788778	LNCaP	prostate:	n/a
8	chr16:59788728-59788778	AG04449	skin:	fetal
9	chr16:59788728-59788778	PrEC	prostate:	n/a
10	chr16:59788728-59788778	SK-N-MC	brain:	n/a
11	chr16:59788728-59788778	K562	blood:	n/a
12	chr16:59788728-59788778	RPTEC	kidney:	n/a
13	chr16:59788728-59788778	HCT-116	colon:	n/a
14	chr16:59788728-59788778	HRE	kidney:	n/a
15	chr16:59788728-59788778	HCF	heart:	n/a
16	chr16:59788728-59788778	NH-A	brain:	n/a
17	chr16:59788728-59788778	PANC-1	pancreas:	n/a
18	chr16:59788728-59788778	HUVEC	blood vessel:	n/a
19	chr16:59788728-59788778	NB4	blood:	n/a
20	chr16:59788728-59788778	Hela-S3	cervix:	n/a
21	chr16:59788728-59788778	AG10803	skin:	n/a
22	chr16:59788728-59788778	H1-hESC	embryonic stem cell:	embryo
23	chr16:59788728-59788778	NT2-D1	testis:	n/a
24	chr16:59788728-59788778	NHBE	bronchial:	n/a
25	chr16:59788728-59788778	GM19239	blood:	n/a
26	chr16:59788728-59788778	BE2_C	brain:	n/a
27	chr16:59788728-59788778	GM12892	blood:	n/a
28	chr16:59788728-59788778	HNPCEpiC	eye:	n/a
29	chr16:59788728-59788778	GM12891	blood:	n/a
30	chr16:59788728-59788778	PFSK-1	brain:	n/a
31	chr16:59788728-59788778	HEK293	kidney:	embryo
32	chr16:59788728-59788778	AG04450	lung:	fetal
33	chr16:59788728-59788778	MCF10A-Er-Src	breast:	n/a
34	chr16:59788728-59788778	HAEpiC	amniotic membrane:	n/a
35	chr16:59788728-59788778	MCF-7	breast:	n/a
36	chr16:59788728-59788778	AoSMC	blood vessel:	n/a
37	chr16:59788728-59788778	HepG2	liver:	n/a
38	chr16:59788728-59788778	HRPEpiC	eye:	n/a
39	chr16:59788728-59788778	HCM	heart:	n/a
40	chr16:59788728-59788778	AG09319	gingival:	n/a
41	chr16:59788728-59788778	T-47D	breast:	n/a
42	chr16:59788728-59788778	Caco-2	colon:	n/a
43	chr16:59788728-59788778	ovcar-3	ovarian:	n/a
44	chr16:59788728-59788778	IMR90	lung:	fetal
45	chr16:59788728-59788778	A549	lung:	n/a
46	chr16:59788728-59788778	HCPEpiC	choroid plexus:	n/a
47	chr16:59788728-59788778	HL-60	blood:	n/a
48	chr16:59788728-59788778	SK-N-SH	brain:	n/a
49	chr16:59788728-59788778	NHDF-neo	bronchial:	n/a
50	chr16:59788728-59788778	Hepatocyte	liver:	n/a

No data

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-105C20.2.1-5	chr16:59788689-59788752	NONHSAT142892
2	lnc-RP11-105C20.2.1-5	chr16:59788045-59789095	NONHSAT142893
3	lnc-RP11-105C20.2.1-5	chr16:59788365-59788930	NONHSAT142894

No data

Variant related genes	Relation type
ENSG00000260240	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv9451	chr16:59635240-60032841	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2422221	chr16:59638102-59851643	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv906749	chr16:59786020-59877306	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59788200-59811600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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