Variant report

Variant	rs536716135
Chromosome Location	chr5:95966754-95966755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:95966687..95968583-chr5:95970116..95972332,2	K562	blood:
2	chr5:95962754..95968222-chr5:95995730..96000718,6	MCF-7	breast:
3	chr5:95962343..95964474-chr5:95964579..95968462,3	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CAST-4	chr5:95966671-95966789	ENSG00000251314.1
2	lnc-CAST-4	chr5:95966671-95966789	NONHSAT102897
3	lnc-CAST-4	chr5:95966671-95966789	ENSG00000251314.2

No data

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	esv3470561	chr5:95964796-95969194	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3402298	chr5:95965821-95968569	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2552626	chr5:95965992-95967880	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3470559	chr5:95966015-95967759	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3470560	chr5:95966460-95967445	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3470558	chr5:95966522-95967366	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3470562	chr5:95966536-95967365	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv16953	chr5:95966616-95967159	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95961200-95967200	Enhancers	HMEC	breast
2	chr5:95961400-95967000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:95962200-95967000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:95963400-95966800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:95963400-95967000	Enhancers	Hela-S3	cervix
6	chr5:95965400-95967200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:95966000-95967200	Enhancers	A549	lung
8	chr5:95966000-95967200	Enhancers	NHEK	skin
9	chr5:95966200-95969000	Weak transcription	Stomach Mucosa	stomach
10	chr5:95966200-95969200	Weak transcription	NHDF-Ad	bronchial
11	chr5:95966200-95969400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:95966200-95969400	Weak transcription	NHLF	lung
13	chr5:95966200-95973400	Weak transcription	HUVEC	blood vessel
14	chr5:95966400-95966800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:95966400-95966800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:95966400-95969200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:95966400-95969200	Weak transcription	Osteobl	bone
18	chr5:95966400-95969400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:95966400-95969400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:95966600-95969200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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