Variant report

Variant	rs536722575
Chromosome Location	chr9:136400273-136400274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894059	chr9:136123840-136486929	Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv894077	chr9:136166346-136515297	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv894078	chr9:136194595-136484292	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv933226	chr9:136224559-136407071	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv894083	chr9:136281753-136452144	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv894084	chr9:136281753-136458311	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv894085	chr9:136281753-136478442	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
10	nsv894092	chr9:136311679-136452144	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv894093	chr9:136311679-136458311	Genic enhancers Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv894094	chr9:136311679-136528721	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
13	nsv530972	chr9:136324358-136643044	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
14	nsv894097	chr9:136333356-136407208	Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv894098	chr9:136335824-136452144	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv894099	chr9:136337168-136459543	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
17	nsv894100	chr9:136371224-136547602	Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
18	nsv894101	chr9:136378650-136458311	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv894102	chr9:136388223-136496708	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv894103	chr9:136397195-136442192	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv615637	chr9:136397834-136404516	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv894104	chr9:136399075-136442192	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136397800-136400400	Enhancers	HSMM	muscle
2	chr9:136398200-136402000	Enhancers	Fetal Brain Male	brain
3	chr9:136398600-136400400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:136398600-136400400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:136398600-136400800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:136398600-136402200	Enhancers	Spleen	Spleen
7	chr9:136399000-136400400	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr9:136399200-136400400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:136399200-136400400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:136399200-136400400	Flanking Active TSS	Brain Germinal Matrix	brain
11	chr9:136399200-136400400	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr9:136399200-136400600	Enhancers	Fetal Heart	heart
13	chr9:136399400-136400400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr9:136399400-136400400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr9:136399400-136400400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:136399400-136400400	Flanking Active TSS	Fetal Brain Female	brain
17	chr9:136399400-136400400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
18	chr9:136399400-136400400	Flanking Active TSS	Right Ventricle	heart
19	chr9:136399400-136401200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr9:136399600-136400400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:136399600-136400400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:136399600-136400400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
23	chr9:136399600-136400400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr9:136399600-136400400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:136399600-136400400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr9:136399600-136400600	Active TSS	Brain Substantia Nigra	brain
27	chr9:136399600-136400800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:136399600-136400800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:136399600-136400800	Active TSS	Right Atrium	heart
30	chr9:136399600-136400800	Active TSS	HepG2	liver
31	chr9:136399800-136400400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:136399800-136400400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
33	chr9:136399800-136400400	Flanking Active TSS	Fetal Lung	lung
34	chr9:136399800-136400400	Flanking Active TSS	Left Ventricle	heart
35	chr9:136399800-136400400	Active TSS	Psoas Muscle	Psoas
36	chr9:136400000-136400400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr9:136400000-136400400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
38	chr9:136400000-136400400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:136400000-136400400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:136400000-136400400	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr9:136400000-136400400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
42	chr9:136400000-136400400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
43	chr9:136400000-136400400	Flanking Active TSS	Liver	Liver
44	chr9:136400000-136400400	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr9:136400000-136400400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr9:136400000-136400400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
47	chr9:136400000-136400400	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr9:136400000-136400400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
49	chr9:136400000-136400400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr9:136400000-136400400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links