Variant report

Variant rs536726980
Chromosome Location chr5:178368946-178368947
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:178352400-178369200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr5:178353800-178374800 ZNF genes & repeats Liver Liver
3 chr5:178362800-178369000 ZNF genes & repeats Duodenum Mucosa Duodenum
4 chr5:178363200-178369000 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
5 chr5:178363800-178369000 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr5:178364600-178369200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
7 chr5:178365200-178369200 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr5:178366000-178370200 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
9 chr5:178366400-178369000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
10 chr5:178366400-178369200 ZNF genes & repeats Lung lung
11 chr5:178366400-178372600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr5:178366600-178369000 Active TSS Stomach Mucosa stomach
13 chr5:178366800-178369000 Active TSS Brain Cingulate Gyrus brain
14 chr5:178366800-178369000 ZNF genes & repeats HSMMtube muscle
15 chr5:178366800-178370200 ZNF genes & repeats H1 Cell Line embryonic stem cell
16 chr5:178366800-178370200 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
17 chr5:178366800-178370400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:178367000-178369000 ZNF genes & repeats H9 Cell Line embryonic stem cell
19 chr5:178367000-178369000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
20 chr5:178367000-178370400 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
21 chr5:178367000-178374600 ZNF genes & repeats Spleen Spleen
22 chr5:178367200-178369000 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
23 chr5:178367200-178369000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
24 chr5:178367200-178369000 Active TSS Pancreatic Islets Pancreatic Islet
25 chr5:178367200-178369000 Active TSS Right Atrium heart
26 chr5:178367200-178369000 ZNF genes & repeats HSMM muscle
27 chr5:178367200-178369000 Active TSS Osteobl bone
28 chr5:178367200-178369200 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
29 chr5:178367400-178369000 Active TSS Brain Anterior Caudate brain
30 chr5:178367400-178369000 ZNF genes & repeats Colonic Mucosa Colon
31 chr5:178367400-178369000 Active TSS Duodenum Smooth Muscle Duodenum
32 chr5:178367400-178369000 Active TSS Fetal Lung lung
33 chr5:178367400-178369000 ZNF genes & repeats Fetal Thymus thymus
34 chr5:178367400-178369000 ZNF genes & repeats Gastric stomach
35 chr5:178367400-178369000 ZNF genes & repeats Thymus Thymus
36 chr5:178367400-178369800 Active TSS Rectal Smooth Muscle rectum
37 chr5:178367400-178370600 ZNF genes & repeats Fetal Intestine Large intestine
38 chr5:178367600-178369000 Active TSS Brain Hippocampus Middle brain
39 chr5:178367600-178369000 Active TSS Fetal Kidney kidney
40 chr5:178367600-178369200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr5:178367600-178369200 Active TSS Fetal Brain Female brain
42 chr5:178367800-178369000 Active TSS Muscle Satellite Cultured Cells --
43 chr5:178367800-178369000 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr5:178368000-178369000 Active TSS iPS-18 Cell Line embryonic stem cell
45 chr5:178368000-178369000 Bivalent/Poised TSS Skeletal Muscle Male skeletal muscle
46 chr5:178368200-178369000 Flanking Active TSS Adipose Nuclei Adipose
47 chr5:178368400-178369000 ZNF genes & repeats Primary hematopoietic stem cells blood
48 chr5:178368400-178369000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr5:178368400-178369000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
50 chr5:178368400-178369000 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle

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