Variant report

Variant	rs536727541
Chromosome Location	chr6:15279346-15279347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15278983..15281973-chr6:15299059..15301860,2	K562	blood:
2	chr6:15277792..15279699-chr6:15286408..15288294,2	K562	blood:
3	chr6:15242226..15244729-chr6:15276839..15280020,3	K562	blood:
4	chr6:15270888..15272572-chr6:15278254..15280290,2	K562	blood:
5	chr6:15272773..15275476-chr6:15276745..15279472,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv601006	chr6:15275305-15300590	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2034818	chr6:15279174-15279587	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3511229	chr6:15279265-15279449	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3474688	chr6:15279309-15279405	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3511228	chr6:15279320-15279405	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3474689	chr6:15279324-15279403	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3511231	chr6:15279324-15279403	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15267200-15279600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:15268000-15279800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:15269200-15290000	Weak transcription	NHLF	lung
6	chr6:15269800-15280000	Weak transcription	NHDF-Ad	bronchial
7	chr6:15270000-15280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:15270000-15281000	Weak transcription	Spleen	Spleen
9	chr6:15270000-15285400	Weak transcription	Thymus	Thymus
10	chr6:15270200-15279600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:15270200-15279800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:15270200-15281600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:15270200-15288800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:15274800-15279800	Enhancers	Psoas Muscle	Psoas
15	chr6:15274800-15280000	Enhancers	Liver	Liver
16	chr6:15275000-15279400	Enhancers	HepG2	liver
17	chr6:15275000-15280200	Weak transcription	Fetal Stomach	stomach
18	chr6:15275000-15282600	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:15275400-15279600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:15275400-15279600	Weak transcription	Stomach Mucosa	stomach
21	chr6:15275400-15281000	Weak transcription	Right Atrium	heart
22	chr6:15275400-15286000	Weak transcription	HSMM	muscle
23	chr6:15275400-15287800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:15275600-15279800	Weak transcription	NHEK	skin
25	chr6:15275600-15281000	Weak transcription	Brain Angular Gyrus	brain
26	chr6:15275600-15285000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:15275800-15280800	Weak transcription	Fetal Thymus	thymus
28	chr6:15276200-15279800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:15276200-15281600	Weak transcription	Fetal Heart	heart
30	chr6:15276200-15282600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:15276400-15279600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:15276600-15279400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:15276600-15279400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:15276600-15279600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:15276600-15279600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:15276600-15279600	Weak transcription	Fetal Brain Female	brain
37	chr6:15276600-15279800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:15276600-15281000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr6:15276600-15282000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr6:15276800-15279600	Weak transcription	Fetal Lung	lung
41	chr6:15276800-15279800	Weak transcription	Primary T cells from cord blood	blood
42	chr6:15276800-15279800	Weak transcription	Fetal Kidney	kidney
43	chr6:15276800-15281200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr6:15276800-15281200	Weak transcription	K562	blood
45	chr6:15276800-15287800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:15276800-15293200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:15277000-15279600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:15277200-15279400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:15277200-15279600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:15277200-15279600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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