Variant report

Variant	rs536729541
Chromosome Location	chr11:74026383-74026384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:74026371-74026421	ovcar-3	ovarian:	n/a
2	chr11:74026371-74026421	T-47D	breast:	n/a
3	chr11:74026371-74026421	CMK	blood:	n/a
4	chr11:74026371-74026421	MCF10A-Er-Src	breast:	n/a
5	chr11:74026371-74026421	BJ	skin:	n/a
6	chr11:74026371-74026421	NT2-D1	testis:	n/a
7	chr11:74026371-74026421	NHDF-neo	bronchial:	n/a
8	chr11:74026371-74026421	Hela-S3	cervix:	n/a
9	chr11:74026371-74026421	SAEC	small airway:	n/a
10	chr11:74026371-74026421	SK-N-MC	brain:	n/a
11	chr11:74026371-74026421	BE2_C	brain:	n/a
12	chr11:74026371-74026421	SKMC	muscle:	n/a
13	chr11:74026371-74026421	HRE	kidney:	n/a
14	chr11:74026371-74026421	HIPEpiC	eye:	n/a
15	chr11:74026371-74026421	HEK293	kidney:	embryo
16	chr11:74026371-74026421	HL-60	blood:	n/a
17	chr11:74026371-74026421	HNPCEpiC	eye:	n/a
18	chr11:74026371-74026421	NH-A	brain:	n/a
19	chr11:74026371-74026421	U87	brain:	n/a
20	chr11:74026371-74026421	PANC-1	pancreas:	n/a
21	chr11:74026371-74026421	PrEC	prostate:	n/a
22	chr11:74026371-74026421	HEEpiC	esophagus:	n/a
23	chr11:74026371-74026421	H1-hESC	embryonic stem cell:	embryo
24	chr11:74026371-74026421	HCF	heart:	n/a
25	chr11:74026371-74026421	HAEpiC	amniotic membrane:	n/a
26	chr11:74026371-74026421	HCT-116	colon:	n/a
27	chr11:74026371-74026421	A549	lung:	n/a
28	chr11:74026371-74026421	IMR90	lung:	fetal
29	chr11:74026371-74026421	AG09309	skin:	n/a
30	chr11:74026371-74026421	GM12878	blood:	n/a
31	chr11:74026371-74026421	PFSK-1	brain:	n/a
32	chr11:74026371-74026421	AG04450	lung:	fetal
33	chr11:74026371-74026421	MCF-7	breast:	n/a
34	chr11:74026371-74026421	SK-N-SH	brain:	n/a
35	chr11:74026371-74026421	NHBE	bronchial:	n/a
36	chr11:74026371-74026421	ECC-1	luminal epithelium:	n/a
37	chr11:74026371-74026421	HRPEpiC	eye:	n/a
38	chr11:74026371-74026421	Caco-2	colon:	n/a
39	chr11:74026371-74026421	HCM	heart:	n/a
40	chr11:74026371-74026421	ProgFib	skin:	n/a
41	chr11:74026371-74026421	GM12892	blood:	n/a
42	chr11:74026371-74026421	Jurkat	blood:	n/a
43	chr11:74026371-74026421	AG10803	skin:	n/a
44	chr11:74026371-74026421	LNCaP	prostate:	n/a
45	chr11:74026371-74026421	HPAEpiC	pulmonary alveolar:	n/a
46	chr11:74026371-74026421	AG04449	skin:	fetal
47	chr11:74026371-74026421	Hepatocyte	liver:	n/a
48	chr11:74026371-74026421	NB4	blood:	n/a
49	chr11:74026371-74026421	RPTEC	kidney:	n/a
50	chr11:74026371-74026421	GM19239	blood:	n/a

No data

Variant related genes	Relation type
P4HA3	CpG island

Extended variants
information (count: 64 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	esv3462630	chr11:74022904-74029002	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3521454	chr11:74023704-74028502	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1806720	chr11:74024257-74026988	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	esv1810557	chr11:74024257-74026988	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	esv1813317	chr11:74024257-74026988	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	esv1848404	chr11:74024257-74026988	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	esv1848754	chr11:74024257-74026988	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	esv1851728	chr11:74024257-74026988	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	esv3462619	chr11:74024484-74027749	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	nsv555413	chr11:74024586-74026988	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
16	esv6478	chr11:74024689-74027625	Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
17	esv3521451	chr11:74024751-74027472	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	esv3521453	chr11:74024759-74027487	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	esv3462652	chr11:74024781-74027494	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	esv3521455	chr11:74024790-74027438	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	esv3521456	chr11:74024790-74027438	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv555415	chr11:74024820-74026546	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
23	nsv555416	chr11:74024820-74026826	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
24	nsv555417	chr11:74024820-74026882	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
25	nsv555418	chr11:74024820-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
26	esv3462585	chr11:74024828-74027457	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
27	esv3462596	chr11:74024833-74027452	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
28	esv3462607	chr11:74024842-74027413	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
29	esv4386	chr11:74024879-74027589	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
30	esv3462641	chr11:74024890-74027395	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
31	esv3462663	chr11:74024906-74027391	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
32	esv11202	chr11:74024930-74027390	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
33	nsv555419	chr11:74025055-74026438	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
34	nsv555420	chr11:74025055-74026546	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
35	nsv555421	chr11:74025055-74026826	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
36	nsv555422	chr11:74025055-74026882	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
37	esv1806181	chr11:74025055-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
38	esv1810097	chr11:74025055-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
39	esv1842749	chr11:74025055-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
40	esv1850384	chr11:74025055-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
41	nsv555423	chr11:74025055-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
42	nsv555424	chr11:74025055-74028944	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	nsv555425	chr11:74025055-74034473	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
44	nsv555426	chr11:74025279-74026826	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
45	nsv555427	chr11:74025279-74026882	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
46	esv1809433	chr11:74025279-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
47	esv1813950	chr11:74025279-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
48	esv1848348	chr11:74025279-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
49	esv1851216	chr11:74025279-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
50	nsv555428	chr11:74025279-74026988	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74023000-74028600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:74023200-74027600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:74023200-74036800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:74023400-74028600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:74023600-74027800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links