Variant report

Variant	rs536757856
Chromosome Location	chr19:19755589-19755590
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:19755526-19755615	GM20000	blood:	n/a	n/a
2	POLR2A	chr19:19754210-19755622	HepG2	liver:	n/a	n/a
3	POLR2A	chr19:19753387-19755619	K562	blood:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19751893..19756920-chr19:19758472..19762276,9	K562	blood:
2	chr19:19736821..19742043-chr19:19751528..19755876,8	MCF-7	breast:
3	chr19:19649879..19653588-chr19:19753029..19755939,4	K562	blood:
4	chr19:19751259..19758144-chr19:19770384..19776332,14	K562	blood:
5	chr19:19752450..19756333-chr19:19763709..19769200,7	K562	blood:
6	chr19:19753961..19756109-chr19:19770427..19773007,2	MCF-7	breast:
7	chr19:19746005..19749139-chr19:19754452..19756751,3	K562	blood:
8	chr19:19751259..19757786-chr19:19771999..19776232,8	K562	blood:
9	chr19:19752883..19756107-chr19:19759212..19764518,8	MCF-7	breast:
10	chr19:19625550..19627956-chr19:19752305..19756076,5	MCF-7	breast:
11	chr19:19752144..19756505-chr19:19773208..19775858,7	MCF-7	breast:
12	chr19:19635157..19637400-chr19:19754505..19756149,2	K562	blood:
13	chr19:19754487..19757148-chr19:19764604..19766993,2	K562	blood:
14	chr19:19637478..19643205-chr19:19752988..19755970,5	MCF-7	breast:
15	chr19:19754977..19756747-chr19:19789710..19792104,2	K562	blood:
16	chr19:19746514..19749043-chr19:19754284..19756520,2	MCF-7	breast:

No data

Variant related genes	Relation type
GMIP	TF binding region
ENSG00000258674	Chromatin interaction
ENSG00000186010	Chromatin interaction
ENSG00000250067	Chromatin interaction
ENSG00000160161	Chromatin interaction
ENSG00000181896	Chromatin interaction
ENSG00000178093	Chromatin interaction
ENSG00000105726	Chromatin interaction
ENSG00000089639	Chromatin interaction
ENSG00000064547	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv911309	chr19:19727042-19784891	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv911310	chr19:19753882-19784891	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
5	esv3330851	chr19:19755507-19852881	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19754400-19755800	Weak transcription	Small Intestine	intestine
2	chr19:19754600-19756000	Weak transcription	Gastric	stomach
3	chr19:19754800-19755600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr19:19754800-19755600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:19754800-19755600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:19754800-19755600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr19:19754800-19755600	Weak transcription	A549	lung
8	chr19:19754800-19755600	Weak transcription	NHLF	lung
9	chr19:19754800-19755800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:19754800-19755800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr19:19754800-19755800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr19:19754800-19755800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:19754800-19755800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr19:19754800-19755800	Weak transcription	Esophagus	oesophagus
15	chr19:19754800-19755800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr19:19754800-19755800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr19:19754800-19755800	Weak transcription	HUVEC	blood vessel
18	chr19:19754800-19756000	Weak transcription	Left Ventricle	heart
19	chr19:19754800-19756000	Weak transcription	Lung	lung
20	chr19:19754800-19756000	Weak transcription	Ovary	ovary
21	chr19:19754800-19756000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr19:19754800-19756200	Weak transcription	Aorta	Aorta
23	chr19:19754800-19756200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr19:19754800-19756400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr19:19754800-19756400	Weak transcription	Psoas Muscle	Psoas
26	chr19:19754800-19756400	Weak transcription	HMEC	breast
27	chr19:19754800-19756400	Weak transcription	HSMMtube	muscle
28	chr19:19754800-19756600	Weak transcription	Brain Substantia Nigra	brain
29	chr19:19754800-19757600	Weak transcription	NH-A	brain
30	chr19:19754800-19757800	Weak transcription	NHDF-Ad	bronchial
31	chr19:19754800-19761400	Weak transcription	HSMM	muscle
32	chr19:19754800-19763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr19:19754800-19764200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr19:19754800-19767200	Weak transcription	Fetal Brain Male	brain
35	chr19:19754800-19769000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr19:19754800-19772400	Weak transcription	Right Atrium	heart
37	chr19:19755000-19755600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr19:19755000-19755600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr19:19755000-19755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:19755000-19755600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr19:19755000-19755800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr19:19755000-19756000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr19:19755000-19756000	Weak transcription	Colonic Mucosa	Colon
44	chr19:19755000-19756000	Weak transcription	Pancreas	Pancrea
45	chr19:19755000-19756000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr19:19755000-19756800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr19:19755000-19757000	Weak transcription	Stomach Mucosa	stomach
48	chr19:19755000-19759000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr19:19755000-19759000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:19755000-19759000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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