Variant report

Variant	rs536771479
Chromosome Location	chr12:76883632-76883633
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520195	chr12:76680360-76909947	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2761751	chr12:76882528-77029086	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76844800-76884000	Weak transcription	Fetal Thymus	thymus
2	chr12:76863400-76884000	Weak transcription	Lung	lung
3	chr12:76864200-76884000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:76864200-76884000	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:76864200-76884000	Weak transcription	Psoas Muscle	Psoas
6	chr12:76864400-76884600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:76864400-76886200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr12:76864400-76886200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr12:76864600-76886600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr12:76864600-76889400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:76865000-76886000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:76865000-76886600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:76865200-76884400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:76865200-76891200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:76865200-76912000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr12:76865400-76909200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:76865600-76883800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr12:76865600-76889400	Weak transcription	NHEK	skin
19	chr12:76865800-76883800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr12:76865800-76884000	Weak transcription	HSMM	muscle
21	chr12:76865800-76886800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr12:76866000-76883800	Weak transcription	Osteobl	bone
23	chr12:76866800-76885000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr12:76867400-76883800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:76869000-76884600	Weak transcription	Esophagus	oesophagus
26	chr12:76869600-76884000	Weak transcription	Colon Smooth Muscle	Colon
27	chr12:76869800-76884000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:76869800-76884200	Weak transcription	Left Ventricle	heart
29	chr12:76869800-76884400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr12:76869800-76884600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:76869800-76895400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr12:76869800-76897800	Weak transcription	Fetal Heart	heart
33	chr12:76871000-76945400	Weak transcription	Gastric	stomach
34	chr12:76871200-76884000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr12:76871400-76884200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr12:76871400-76884600	Weak transcription	GM12878-XiMat	blood
37	chr12:76873000-76886600	Weak transcription	Brain Hippocampus Middle	brain
38	chr12:76873200-76884000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr12:76875200-76884000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr12:76875200-76884600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:76875200-76886200	Weak transcription	Small Intestine	intestine
42	chr12:76875200-76886800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr12:76875200-76922400	Weak transcription	K562	blood
44	chr12:76875400-76884600	Weak transcription	Adipose Nuclei	Adipose
45	chr12:76875600-76884000	Weak transcription	Fetal Stomach	stomach
46	chr12:76876200-76884600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr12:76876200-76887600	Weak transcription	Colonic Mucosa	Colon
48	chr12:76876400-76887000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:76876600-76887600	Weak transcription	HepG2	liver
50	chr12:76876800-76912200	Weak transcription	Spleen	Spleen

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