Variant report

Variant	rs536774242
Chromosome Location	chr15:56447926-56447927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56447230..56450204-chr15:56462832..56464767,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3311800	chr15:56447807-56449077	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56424800-56453800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:56433800-56464000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:56435200-56458800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:56435400-56461000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:56435400-56462400	Weak transcription	Fetal Thymus	thymus
6	chr15:56435400-56465200	Weak transcription	Thymus	Thymus
7	chr15:56435800-56454000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:56436000-56448600	Weak transcription	K562	blood
9	chr15:56436000-56458000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:56436400-56455800	Weak transcription	Liver	Liver
11	chr15:56436600-56458800	Weak transcription	Primary B cells from cord blood	blood
12	chr15:56441000-56453200	Weak transcription	A549	lung
13	chr15:56441000-56461400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:56442000-56457200	Weak transcription	HMEC	breast
15	chr15:56442000-56458000	Weak transcription	HepG2	liver
16	chr15:56442000-56462600	Weak transcription	HSMM	muscle
17	chr15:56442200-56451000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:56442200-56457200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:56442600-56470600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:56442800-56450800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:56442800-56454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:56442800-56462600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:56443200-56452200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:56443200-56462600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr15:56446600-56468400	Weak transcription	Fetal Lung	lung
26	chr15:56447600-56448000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:56447600-56448600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:56447600-56451200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr15:56447600-56457800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:56447800-56455800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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